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Started by upstream project "BIOFORMATS-test-repo" build number 307 originally caused by: Started by upstream project "Trigger" build number 329 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1997766695213966494.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48709_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:23:47,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:23:47,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:23:47,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:23:47,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:23:47,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:23:47,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:23:47,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:23:47,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:23:47,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:23:47,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:23:47,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:23:47,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:23:48,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:23:48,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:23:48,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:23:48,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:23:48,080 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:23:48,080 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:23:48,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:23:48,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:23:48,081 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:23:48,082 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:23:48,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 294 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-03 04:23:48,093] [main] java.version = 1.8.0_342 [testng] 04:23:48,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:23:48,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:48,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-03_04-23-48.log] [testng] 04:23:48,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2025-01-03 04:23:48,150] [main] testng.directory = /data [testng] [2025-01-03 04:23:48,150] [main] testng.configDirectory = /config [testng] [2025-01-03 04:23:48,163] [main] testng.multiplier = 1.0 [testng] [2025-01-03 04:23:48,163] [main] testng.in-memory = false [testng] [2025-01-03 04:23:48,163] [main] testng.allow-missing = false [testng] [2025-01-03 04:23:48,163] [main] user.language = en [testng] [2025-01-03 04:23:48,163] [main] user.country = ${user.country} [testng] [2025-01-03 04:23:48,163] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-01-03 04:24:08,900] [main] ---------------------------------------- [testng] [2025-01-03 04:24:08,900] [main] Total files: 31 [testng] [2025-01-03 04:24:08,900] [main] Scan time: 20.737 s (668 ms/file) [testng] [2025-01-03 04:24:08,900] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-03 04:24:36,352] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: [testng] 04:24:36,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:24:36,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:36,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-03_04-24-36.log] [testng] 04:24:36,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad05265 - End of configuration. [testng] [2025-01-03 04:24:36,548] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jbig: [testng] 04:24:36,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:24:36,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:36,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-03_04-24-36.log] [testng] 04:24:36,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@113d8bcf - End of configuration. [testng] [2025-01-03 04:24:37,991] [pool-1-thread-11] Initializing /data/vikram/Captured 3.jp2: [testng] 04:24:37,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:24:37,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:37,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-03_04-24-37.log] [testng] 04:24:37,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a527551 - End of configuration. [testng] [2025-01-03 04:24:38,702] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] 04:24:38,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:24:38,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:38,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-03_04-24-38.log] [testng] 04:24:38,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e7821cb - End of configuration. [testng] [2025-01-03 04:24:39,974] [pool-1-thread-9] Initializing /data/big-images/8kx8k.jpf: [testng] 04:24:39,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:24:39,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:39,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-03_04-24-39.log] [testng] 04:24:39,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46bee485 - End of configuration. [testng] [2025-01-03 04:24:41,485] [pool-1-thread-8] Initializing /data/vikram/Captured 1.jp2: [testng] 04:24:41,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:24:41,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:41,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-03_04-24-41.log] [testng] 04:24:41,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d0e060b - End of configuration. [testng] [2025-01-03 04:24:42,053] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2: [testng] 04:24:42,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:24:42,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:42,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-03_04-24-42.log] [testng] 04:24:42,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4004581a - End of configuration. [testng] [2025-01-03 04:24:42,910] [pool-1-thread-6] Initializing /data/david/multichannel-2d test.jp2: [testng] 04:24:42,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:24:42,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:42,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-03_04-24-42.log] [testng] 04:24:42,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c2d434 - End of configuration. [testng] [2025-01-03 04:24:43,489] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 04:24:43,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:24:43,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:43,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-03_04-24-43.log] [testng] 04:24:43,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82bf8a8 - End of configuration. [testng] [2025-01-03 04:24:45,016] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 04:24:45,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:24:45,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:45,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-03_04-24-45.log] [testng] 04:24:45,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@442931f9 - End of configuration. [testng] [2025-01-03 04:24:45,574] [pool-1-thread-3] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 04:24:45,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:24:45,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:45,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-03_04-24-45.log] [testng] 04:24:45,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dfd1905 - End of configuration. [testng] [2025-01-03 04:24:46,403] [pool-1-thread-2] Initializing /data/vikram/Captured 5.jp2: [testng] 04:24:46,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:24:46,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:46,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-03_04-24-46.log] [testng] 04:24:46,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cdcdcfa - End of configuration. [testng] [2025-01-03 04:24:53,709] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-01-03 04:24:55,679] [pool-1-thread-7] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-01-03 04:24:56,291] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: [testng] [2025-01-03 04:24:57,001] [pool-1-thread-8] Initializing /data/david/cy5-tph.jp2: [testng] [2025-01-03 04:24:57,557] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-01-03 04:25:00,743] [pool-1-thread-12] Initializing /data/kraig/head.jp2: [testng] [2025-01-03 04:25:01,373] [pool-1-thread-5] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-01-03 04:25:02,105] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2025-01-03 04:25:03,225] [pool-1-thread-1] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-01-03 04:25:05,635] [pool-1-thread-11] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2025-01-03 04:25:06,672] [pool-1-thread-10] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-01-03 04:25:07,570] [pool-1-thread-4] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2025-01-03 04:25:11,023] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2025-01-03 04:25:15,592] [pool-1-thread-5] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-01-03 04:25:18,957] [pool-1-thread-7] Initializing /data/david/000000_000001.jpx: [testng] [2025-01-03 04:25:23,921] [pool-1-thread-12] Initializing /data/frans/flower.jp2: [testng] [2025-01-03 04:25:24,618] [pool-1-thread-5] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-01-03 04:25:25,223] [pool-1-thread-3] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 57 seconds Finished: SUCCESS