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Started by upstream project "BIOFORMATS-test-repo" build number 308 originally caused by: Started by upstream project "Trigger" build number 330 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15140378734128275811.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48807_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:54:40,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:54:40,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:54:40,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:54:40,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:54:40,703 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:54:40,704 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:54:40,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:54:40,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:54:40,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:54:40,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:54:40,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:54:40,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:54:40,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:54:40,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:54:40,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:54:40,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:54:40,900 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:54:40,900 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:54:40,900 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:54:40,901 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:54:40,901 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:54:40,902 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:54:40,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-04 01:54:40,911] [main] java.version = 11.0.16 [testng] 01:54:40,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:54:40,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:40,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-04_01-54-40.log] [testng] 01:54:40,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2025-01-04 01:54:40,961] [main] testng.directory = /data [testng] [2025-01-04 01:54:40,961] [main] testng.configDirectory = /config [testng] [2025-01-04 01:54:40,971] [main] testng.multiplier = 1.0 [testng] [2025-01-04 01:54:40,972] [main] testng.in-memory = false [testng] [2025-01-04 01:54:40,972] [main] testng.allow-missing = false [testng] [2025-01-04 01:54:40,972] [main] user.language = en [testng] [2025-01-04 01:54:40,972] [main] user.country = ${user.country} [testng] [2025-01-04 01:54:40,972] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-04 01:56:46,060] [main] ---------------------------------------- [testng] [2025-01-04 01:56:46,060] [main] Total files: 268 [testng] [2025-01-04 01:56:46,060] [main] Scan time: 125.088 s (466 ms/file) [testng] [2025-01-04 01:56:46,060] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-04 02:00:45,238] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 02:00:45,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:00:45,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:45,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-04_02-00-45.log] [testng] 02:00:45,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13b3f53c - End of configuration. [testng] [2025-01-04 02:00:46,435] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] 02:00:46,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:00:46,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:46,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-04_02-00-46.log] [testng] 02:00:46,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@603682b9 - End of configuration. [testng] [2025-01-04 02:00:47,309] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] 02:00:47,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:00:47,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:47,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-04_02-00-47.log] [testng] 02:00:47,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b7df07 - End of configuration. [testng] [2025-01-04 02:00:48,371] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 02:00:48,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:00:48,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:48,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-04_02-00-48.log] [testng] 02:00:48,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39f6ab7a - End of configuration. [testng] [2025-01-04 02:00:48,574] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] 02:00:48,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:00:48,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:48,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-04_02-00-48.log] [testng] 02:00:48,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dc4d6b3 - End of configuration. [testng] [2025-01-04 02:00:48,800] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 02:00:48,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:00:48,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:48,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-04_02-00-48.log] [testng] 02:00:48,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c517b6 - End of configuration. [testng] [2025-01-04 02:00:49,606] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] 02:00:49,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:00:49,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:49,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-04_02-00-49.log] [testng] 02:00:49,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fc8227e - End of configuration. [testng] [2025-01-04 02:00:49,838] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] 02:00:49,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:00:49,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:49,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-04_02-00-49.log] [testng] 02:00:49,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53fc5790 - End of configuration. [testng] [2025-01-04 02:00:50,068] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 02:00:50,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:00:50,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:50,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-04_02-00-50.log] [testng] 02:00:50,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58bea10d - End of configuration. [testng] [2025-01-04 02:00:50,283] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] 02:00:50,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:00:50,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:50,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-04_02-00-50.log] [testng] 02:00:50,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@729b99d8 - End of configuration. [testng] [2025-01-04 02:00:51,338] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] 02:00:51,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:00:51,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:51,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-04_02-00-51.log] [testng] 02:00:51,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0a7017 - End of configuration. [testng] [2025-01-04 02:00:51,551] [pool-1-thread-2] Initializing /data/steve/TIFF/Hough test TIFF: [testng] 02:00:51,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:00:51,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:51,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-04_02-00-51.log] [testng] 02:00:51,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b37e9a7 - End of configuration. [testng] [2025-01-04 02:00:55,954] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2025-01-04 02:00:56,241] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2025-01-04 02:00:56,973] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2025-01-04 02:00:57,819] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2025-01-04 02:00:58,051] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2025-01-04 02:00:58,535] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2025-01-04 02:01:02,927] [pool-1-thread-10] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2025-01-04 02:01:03,702] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2025-01-04 02:01:04,029] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2025-01-04 02:01:05,721] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2025-01-04 02:01:06,098] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2025-01-04 02:01:06,532] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2025-01-04 02:01:06,836] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2025-01-04 02:01:07,085] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2025-01-04 02:01:07,591] [pool-1-thread-9] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2025-01-04 02:01:08,395] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2025-01-04 02:01:10,979] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2025-01-04 02:01:11,291] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2025-01-04 02:01:11,789] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2025-01-04 02:01:13,095] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2025-01-04 02:01:13,253] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2025-01-04 02:01:13,708] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2025-01-04 02:01:14,186] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2025-01-04 02:01:14,585] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2025-01-04 02:01:17,889] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2025-01-04 02:01:21,900] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2025-01-04 02:01:23,786] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2025-01-04 02:01:25,395] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2025-01-04 02:01:26,832] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2025-01-04 02:01:28,874] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2025-01-04 02:01:29,177] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2025-01-04 02:01:29,536] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2025-01-04 02:01:30,500] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2025-01-04 02:01:30,768] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2025-01-04 02:01:31,104] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2025-01-04 02:01:33,351] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2025-01-04 02:01:33,754] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2025-01-04 02:01:33,973] [pool-1-thread-12] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2025-01-04 02:01:34,955] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2025-01-04 02:01:35,524] [pool-1-thread-9] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2025-01-04 02:01:35,853] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2025-01-04 02:01:35,943] [pool-1-thread-5] Initializing /data/steve/FITS/M13.fits: [testng] [2025-01-04 02:01:36,035] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2025-01-04 02:01:36,640] [pool-1-thread-10] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2025-01-04 02:01:37,932] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2025-01-04 02:01:40,437] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2025-01-04 02:01:40,875] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2025-01-04 02:01:41,741] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2025-01-04 02:01:42,313] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2025-01-04 02:01:42,477] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2025-01-04 02:01:43,102] [pool-1-thread-6] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2025-01-04 02:01:45,877] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2025-01-04 02:01:46,630] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2025-01-04 02:01:46,996] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2025-01-04 02:01:47,500] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2025-01-04 02:01:47,963] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2025-01-04 02:01:48,423] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2025-01-04 02:01:48,859] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2025-01-04 02:01:49,876] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2025-01-04 02:01:50,578] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2025-01-04 02:01:52,426] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2025-01-04 02:01:53,724] [pool-1-thread-1] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2025-01-04 02:01:55,432] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2025-01-04 02:01:55,622] [pool-1-thread-2] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2025-01-04 02:01:56,190] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2025-01-04 02:01:57,999] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2025-01-04 02:01:58,655] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2025-01-04 02:01:59,196] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2025-01-04 02:02:00,985] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2025-01-04 02:02:01,496] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2025-01-04 02:02:01,718] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2025-01-04 02:02:03,649] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2025-01-04 02:02:04,920] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2025-01-04 02:02:05,622] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2025-01-04 02:02:06,208] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2025-01-04 02:02:06,760] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2025-01-04 02:02:08,157] [pool-1-thread-3] Initializing /data/steve/FITS/M51.fits: [testng] [2025-01-04 02:02:08,357] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2025-01-04 02:02:09,501] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2025-01-04 02:02:09,731] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2025-01-04 02:02:10,203] [pool-1-thread-4] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2025-01-04 02:02:12,097] [pool-1-thread-12] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2025-01-04 02:02:12,861] [pool-1-thread-3] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2025-01-04 02:02:14,781] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2025-01-04 02:02:14,977] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2025-01-04 02:02:16,133] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2025-01-04 02:02:16,344] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2025-01-04 02:02:18,113] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2025-01-04 02:02:18,388] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2025-01-04 02:02:18,831] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2025-01-04 02:02:20,236] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2025-01-04 02:02:21,896] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2025-01-04 02:02:23,305] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2025-01-04 02:02:24,190] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2025-01-04 02:02:24,631] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2025-01-04 02:02:25,292] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2025-01-04 02:02:26,554] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2025-01-04 02:02:27,188] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2025-01-04 02:02:29,480] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2025-01-04 02:02:30,657] [pool-1-thread-3] Initializing /data/steve/Targa/Test.TGA: [testng] [2025-01-04 02:02:32,848] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2025-01-04 02:02:34,455] [pool-1-thread-9] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2025-01-04 02:02:35,797] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2025-01-04 02:02:36,210] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2025-01-04 02:02:36,612] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2025-01-04 02:02:38,182] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2025-01-04 02:02:39,055] [pool-1-thread-5] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2025-01-04 02:02:40,219] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2025-01-04 02:02:41,711] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2025-01-04 02:02:42,913] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2025-01-04 02:02:44,258] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2025-01-04 02:02:44,958] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2025-01-04 02:02:45,289] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2025-01-04 02:02:45,726] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2025-01-04 02:02:47,287] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2025-01-04 02:02:48,507] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2025-01-04 02:02:49,004] [pool-1-thread-4] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2025-01-04 02:02:49,302] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2025-01-04 02:02:50,006] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2025-01-04 02:02:51,456] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2025-01-04 02:02:52,172] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2025-01-04 02:02:52,642] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2025-01-04 02:02:53,041] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2025-01-04 02:02:53,469] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2025-01-04 02:02:53,907] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2025-01-04 02:02:55,027] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2025-01-04 02:02:55,405] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2025-01-04 02:02:57,695] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2025-01-04 02:02:59,418] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2025-01-04 02:03:00,404] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2025-01-04 02:03:01,047] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2025-01-04 02:03:01,670] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2025-01-04 02:03:02,269] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2025-01-04 02:03:03,268] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2025-01-04 02:03:04,314] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2025-01-04 02:03:05,286] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2025-01-04 02:03:07,069] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2025-01-04 02:03:08,783] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2025-01-04 02:03:11,781] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2025-01-04 02:03:12,257] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2025-01-04 02:03:13,219] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2025-01-04 02:03:15,298] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2025-01-04 02:03:17,209] [pool-1-thread-4] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2025-01-04 02:03:18,911] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2025-01-04 02:03:19,428] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2025-01-04 02:03:21,181] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2025-01-04 02:03:21,974] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2025-01-04 02:03:23,452] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 55 seconds Finished: SUCCESS