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Started by upstream project "BIOFORMATS-test-repo" build number 36 originally caused by: Started by upstream project "Trigger" build number 40 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3991545173974520223.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4893_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:20:16,875 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:16,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:20:16,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:16,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:16,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:16,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:16,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:16,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:16,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:16,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:16,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:16,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:17,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:17,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:17,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:17,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:17,066 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:17,066 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:17,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:17,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:17,067 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:20:17,068 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:20:17,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-16 01:20:17,076] [main] java.version = 11.0.16 [testng] 01:20:17,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:17,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:17,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-16_01-20-17.log] [testng] 01:20:17,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-16 01:20:17,123] [main] testng.directory = /data [testng] [2024-04-16 01:20:17,123] [main] testng.configDirectory = /config [testng] [2024-04-16 01:20:17,132] [main] testng.multiplier = 1.0 [testng] [2024-04-16 01:20:17,133] [main] testng.in-memory = false [testng] [2024-04-16 01:20:17,134] [main] testng.allow-missing = false [testng] [2024-04-16 01:20:17,134] [main] user.language = en [testng] [2024-04-16 01:20:17,134] [main] user.country = ${user.country} [testng] [2024-04-16 01:20:17,134] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-16 01:20:17,545] [main] ---------------------------------------- [testng] [2024-04-16 01:20:17,545] [main] Total files: 36 [testng] [2024-04-16 01:20:17,545] [main] Scan time: 0.411 s (11 ms/file) [testng] [2024-04-16 01:20:17,546] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-16 01:20:18,572] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 01:20:18,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:18,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-16_01-20-18.log] [testng] 01:20:18,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b658f6d - End of configuration. [testng] [2024-04-16 01:20:18,624] [pool-1-thread-12] Initializing /data/generated/mri-stack8.pcx: [testng] 01:20:18,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:18,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-16_01-20-18.log] [testng] 01:20:18,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7de19ffb - End of configuration. [testng] [2024-04-16 01:20:18,631] [pool-1-thread-11] Initializing /data/generated/mri-stack0.pcx: [testng] 01:20:18,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:18,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-16_01-20-18.log] [testng] 01:20:18,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54220cff - End of configuration. [testng] [2024-04-16 01:20:18,637] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 01:20:18,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:18,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-16_01-20-18.log] [testng] 01:20:18,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ecd721a - End of configuration. [testng] [2024-04-16 01:20:18,651] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:20:18,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:18,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-16_01-20-18.log] [testng] 01:20:18,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29beca82 - End of configuration. [testng] [2024-04-16 01:20:18,657] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 01:20:18,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:18,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-16_01-20-18.log] [testng] 01:20:18,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ed90d18 - End of configuration. [testng] [2024-04-16 01:20:18,665] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] 01:20:18,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:18,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-16_01-20-18.log] [testng] 01:20:18,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42852aca - End of configuration. [testng] [2024-04-16 01:20:18,671] [pool-1-thread-6] Initializing /data/generated/mri-stack7.pcx: [testng] 01:20:18,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:18,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-16_01-20-18.log] [testng] 01:20:18,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad9b20d - End of configuration. [testng] [2024-04-16 01:20:18,677] [pool-1-thread-5] Initializing /data/generated/mri-stack3.pcx: [testng] 01:20:18,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:18,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-16_01-20-18.log] [testng] 01:20:18,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653f736d - End of configuration. [testng] [2024-04-16 01:20:18,683] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 01:20:18,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:18,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-16_01-20-18.log] [testng] 01:20:18,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340f8108 - End of configuration. [testng] [2024-04-16 01:20:18,694] [pool-1-thread-3] Initializing /data/generated/mri-stack21.pcx: [testng] 01:20:18,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:18,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-16_01-20-18.log] [testng] 01:20:18,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe592c1 - End of configuration. [testng] [2024-04-16 01:20:18,701] [pool-1-thread-2] Initializing /data/generated/mri-stack23.pcx: [testng] 01:20:18,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:18,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:18,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-16_01-20-18.log] [testng] 01:20:18,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22829df6 - End of configuration. [testng] [2024-04-16 01:20:20,961] [pool-1-thread-9] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-04-16 01:20:20,964] [pool-1-thread-11] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-04-16 01:20:20,967] [pool-1-thread-7] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-04-16 01:20:20,971] [pool-1-thread-5] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-04-16 01:20:20,974] [pool-1-thread-6] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-04-16 01:20:20,977] [pool-1-thread-3] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-04-16 01:20:20,980] [pool-1-thread-12] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-04-16 01:20:20,983] [pool-1-thread-2] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-04-16 01:20:20,986] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-04-16 01:20:20,990] [pool-1-thread-8] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-04-16 01:20:20,993] [pool-1-thread-1] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-04-16 01:20:20,996] [pool-1-thread-4] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-04-16 01:20:21,314] [pool-1-thread-6] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-04-16 01:20:21,317] [pool-1-thread-10] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-04-16 01:20:21,319] [pool-1-thread-9] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-04-16 01:20:21,394] [pool-1-thread-11] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-04-16 01:20:21,400] [pool-1-thread-12] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-04-16 01:20:21,403] [pool-1-thread-8] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-04-16 01:20:21,408] [pool-1-thread-1] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-04-16 01:20:21,413] [pool-1-thread-7] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-04-16 01:20:21,417] [pool-1-thread-5] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-04-16 01:20:21,449] [pool-1-thread-4] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-04-16 01:20:21,455] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS