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Started by upstream project "BIOFORMATS-test-repo" build number 309 originally caused by: Started by upstream project "Trigger" build number 331 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2936963509789447027.sh + '[' pict = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48934_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:49:49,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:49:49,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:49:49,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:49,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:49,408 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:49:49,408 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:49:49,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:49:49,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:49,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:49,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:49:49,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:49:49,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:49:49,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:49:49,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:49:49,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:49:49,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:49:49,599 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:49:49,599 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:49:49,600 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:49:49,600 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:49:49,600 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:49:49,601 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:49:49,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-05 00:49:49,610] [main] java.version = 17.0.2 [testng] 00:49:49,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:49:49,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:49,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-05_00-49-49.log] [testng] 00:49:49,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-05 00:49:49,656] [main] testng.directory = /data [testng] [2025-01-05 00:49:49,656] [main] testng.configDirectory = /config [testng] [2025-01-05 00:49:49,664] [main] testng.multiplier = 1.0 [testng] [2025-01-05 00:49:49,665] [main] testng.in-memory = false [testng] [2025-01-05 00:49:49,665] [main] testng.allow-missing = false [testng] [2025-01-05 00:49:49,665] [main] user.language = en [testng] [2025-01-05 00:49:49,666] [main] user.country = ${user.country} [testng] [2025-01-05 00:49:49,666] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-05 00:49:50,510] [main] ---------------------------------------- [testng] [2025-01-05 00:49:50,510] [main] Total files: 25 [testng] [2025-01-05 00:49:50,510] [main] Scan time: 0.844 s (33 ms/file) [testng] [2025-01-05 00:49:50,510] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-05 00:49:53,550] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 00:49:53,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:49:53,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:53,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-05_00-49-53.log] [testng] 00:49:53,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e34ed23 - End of configuration. [testng] [2025-01-05 00:49:53,630] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] 00:49:53,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:49:53,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:53,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-05_00-49-53.log] [testng] 00:49:53,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d19ce0d - End of configuration. [testng] [2025-01-05 00:49:53,672] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] 00:49:53,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:49:53,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:53,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-05_00-49-53.log] [testng] 00:49:53,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b31862d - End of configuration. [testng] [2025-01-05 00:49:53,826] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:49:53,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:49:53,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:53,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-05_00-49-53.log] [testng] 00:49:53,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd2ebf0 - End of configuration. [testng] [2025-01-05 00:49:53,871] [pool-1-thread-9] Initializing /data/jqd/sixteenBit.pict: [testng] 00:49:53,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:49:53,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:53,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-05_00-49-53.log] [testng] 00:49:53,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fcae50 - End of configuration. [testng] [2025-01-05 00:49:53,911] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:49:53,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:49:53,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:53,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-05_00-49-53.log] [testng] 00:49:53,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d71868 - End of configuration. [testng] [2025-01-05 00:49:53,976] [pool-1-thread-7] Initializing /data/jqd/32bit.pict: [testng] 00:49:53,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:49:53,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:53,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-05_00-49-53.log] [testng] 00:49:53,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa57fb1 - End of configuration. [testng] [2025-01-05 00:49:54,034] [pool-1-thread-6] Initializing /data/brian/images/VENUS.pct: [testng] 00:49:54,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:49:54,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:54,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-05_00-49-54.log] [testng] 00:49:54,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b48a44e - End of configuration. [testng] [2025-01-05 00:49:54,117] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict: [testng] 00:49:54,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:49:54,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:54,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-05_00-49-54.log] [testng] 00:49:54,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790a6afa - End of configuration. [testng] [2025-01-05 00:49:54,199] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] 00:49:54,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:49:54,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:54,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-05_00-49-54.log] [testng] 00:49:54,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6526877 - End of configuration. [testng] [2025-01-05 00:49:54,246] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:49:54,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:49:54,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:54,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-05_00-49-54.log] [testng] 00:49:54,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5389b543 - End of configuration. [testng] [2025-01-05 00:49:54,425] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:49:54,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:49:54,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:54,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-05_00-49-54.log] [testng] 00:49:54,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd022 - End of configuration. [testng] [2025-01-05 00:49:56,600] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2025-01-05 00:49:56,801] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] [2025-01-05 00:49:56,919] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2025-01-05 00:49:56,977] [pool-1-thread-12] Initializing /data/misc/planet.pict: [testng] [2025-01-05 00:49:57,343] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2025-01-05 00:49:57,500] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2025-01-05 00:49:57,585] [pool-1-thread-11] Initializing /data/brian/images/RED.PCT: [testng] [2025-01-05 00:49:57,643] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] [2025-01-05 00:49:57,729] [pool-1-thread-8] Initializing /data/misc/planet2.pict: [testng] [2025-01-05 00:49:57,798] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] [2025-01-05 00:49:57,835] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] [2025-01-05 00:49:57,891] [pool-1-thread-3] Initializing /data/misc/planet.png: [testng] [2025-01-05 00:49:58,816] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS