![[Jenkins]](/jenkins/static/5093b9c7/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 310 originally caused by: Started by upstream project "Trigger" build number 332 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2997662981777967250.sh + '[' samples = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_49078_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:36:44,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:36:44,134 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:36:44,134 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:36:44,135 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:36:44,135 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:36:44,136 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:36:44,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:36:44,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:36:44,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:36:44,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:36:44,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:36:44,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:36:44,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:36:44,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:36:44,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:36:44,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:36:44,455 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:36:44,455 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:36:44,455 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:36:44,456 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:36:44,456 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:36:44,457 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:36:44,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 320 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-06 00:36:44,467] [main] java.version = 1.8.0_342 [testng] 00:36:44,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:36:44,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:44,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-06_00-36-44.log] [testng] 00:36:44,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2025-01-06 00:36:44,528] [main] testng.directory = /data [testng] [2025-01-06 00:36:44,528] [main] testng.configDirectory = /config [testng] [2025-01-06 00:36:44,544] [main] testng.multiplier = 1.0 [testng] [2025-01-06 00:36:44,545] [main] testng.in-memory = false [testng] [2025-01-06 00:36:44,545] [main] testng.allow-missing = false [testng] [2025-01-06 00:36:44,545] [main] user.language = fr [testng] [2025-01-06 00:36:44,545] [main] user.country = FR [testng] [2025-01-06 00:36:44,545] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-01-06 00:37:30,757] [main] ---------------------------------------- [testng] [2025-01-06 00:37:30,757] [main] Total files: 164 [testng] [2025-01-06 00:37:30,757] [main] Scan time: 46.212 s (281 ms/file) [testng] [2025-01-06 00:37:30,758] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-06 00:38:39,120] [pool-1-thread-1] Initializing /data/10-31 E1/10-31 E1.tif: [testng] 00:38:39,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:38:39,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:39,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-06_00-38-39.log] [testng] 00:38:39,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14a5164f - End of configuration. [testng] [2025-01-06 00:38:39,866] [pool-1-thread-12] Initializing /data/ome/tinyTest.d3d.dv: [testng] 00:38:39,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:38:39,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:39,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-06_00-38-39.log] [testng] 00:38:39,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f463541 - End of configuration. [testng] [2025-01-06 00:38:39,953] [pool-1-thread-11] Initializing /data/openjpeg/Bretagne1.j2k: [testng] 00:38:39,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:38:39,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:39,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-06_00-38-39.log] [testng] 00:38:39,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@737f57cc - End of configuration. [testng] [2025-01-06 00:38:40,192] [pool-1-thread-10] Initializing /data/ome/Cmidmusgfp1.lsm: [testng] 00:38:40,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:38:40,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:40,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-06_00-38-40.log] [testng] 00:38:40,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a0c0db - End of configuration. [testng] [2025-01-06 00:38:40,452] [pool-1-thread-9] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF: [testng] 00:38:40,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:38:40,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:40,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-06_00-38-40.log] [testng] 00:38:40,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10a3be7f - End of configuration. [testng] [2025-01-06 00:38:40,808] [pool-1-thread-8] Initializing /data/ome/Adultmidsection.lsm: [testng] 00:38:40,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:38:40,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:40,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-06_00-38-40.log] [testng] 00:38:40,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a3ba219 - End of configuration. [testng] [2025-01-06 00:38:41,073] [pool-1-thread-7] Initializing /data/openjpeg/Cevennes2.bmp: [testng] 00:38:41,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:38:41,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:41,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-06_00-38-41.log] [testng] 00:38:41,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75588335 - End of configuration. [testng] [2025-01-06 00:38:41,123] [pool-1-thread-6] Initializing /data/openjpeg/thumb_Speedway.jpg: [testng] 00:38:41,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:38:41,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:41,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-06_00-38-41.log] [testng] 00:38:41,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@681cbbf8 - End of configuration. [testng] [2025-01-06 00:38:41,180] [pool-1-thread-5] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF: [testng] 00:38:41,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:38:41,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:41,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-06_00-38-41.log] [testng] 00:38:41,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15fbca68 - End of configuration. [testng] [2025-01-06 00:38:41,787] [pool-1-thread-4] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK: [testng] 00:38:41,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:38:41,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:41,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-06_00-38-41.log] [testng] 00:38:41,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4539ead9 - End of configuration. [testng] [2025-01-06 00:38:42,435] [pool-1-thread-3] Initializing /data/openjpeg/Rome.bmp: [testng] 00:38:42,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:38:42,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:42,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-06_00-38-42.log] [testng] 00:38:42,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3abd113c - End of configuration. [testng] [2025-01-06 00:38:42,492] [pool-1-thread-2] Initializing /data/ome/CHOBI_d3d.dv: [testng] 00:38:42,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:38:42,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:42,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-06_00-38-42.log] [testng] 00:38:42,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf9c548 - End of configuration. [testng] [2025-01-06 00:38:45,031] [pool-1-thread-12] Initializing /data/openjpeg/Bretagne2.j2k: [testng] [2025-01-06 00:38:45,325] [pool-1-thread-3] Initializing /data/openjpeg/Cevennes1.bmp: [testng] [2025-01-06 00:38:45,408] [pool-1-thread-7] Initializing /data/ome/011B1_Morph.HTD: [testng] [2025-01-06 00:38:46,812] [pool-1-thread-2] Initializing /data/openjpeg/Facade.pnm: [testng] [2025-01-06 00:38:47,147] [pool-1-thread-6] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg: [testng] [2025-01-06 00:38:48,335] [pool-1-thread-10] Initializing /data/mouse-kidney/mouse-kidney.lif: [testng] [2025-01-06 00:38:48,879] [pool-1-thread-8] Initializing /data/openjpeg/thumb_facade.jpg: [testng] [2025-01-06 00:38:49,069] [pool-1-thread-11] Initializing /data/openjpeg/Rome.jp2: [testng] [2025-01-06 00:38:49,820] [pool-1-thread-9] Initializing /data/TAABA/TAABA.pattern: [testng] [2025-01-06 00:39:03,117] [pool-1-thread-5] Initializing /data/ome/anusgfpzs.lsm: [testng] [2025-01-06 00:39:03,473] [pool-1-thread-2] Initializing /data/ome/t1_pos1-0_5x.lsm: [testng] [2025-01-06 00:39:03,826] [pool-1-thread-6] Initializing /data/openjpeg/FacadeERROPJ.bmp: [testng] [2025-01-06 00:39:03,936] [pool-1-thread-1] Initializing /data/ome/worm.tiff: [testng] [2025-01-06 00:39:04,827] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.ppm: [testng] [2025-01-06 00:39:05,165] [pool-1-thread-10] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK: [testng] [2025-01-06 00:39:05,684] [pool-1-thread-8] Initializing /data/ome/210502-0min-NFKB-4.r3d: [testng] [2025-01-06 00:39:06,276] [pool-1-thread-3] Initializing /data/ome/arwen0205_raw00201.pic: [testng] [2025-01-06 00:39:07,982] [pool-1-thread-5] Initializing /data/ome/n2_plate18_P24_w1.tif: [testng] [2025-01-06 00:39:09,479] [pool-1-thread-8] Initializing /data/ome/C1lowmusgfp.lsm: [testng] [2025-01-06 00:39:10,028] [pool-1-thread-6] Initializing /data/ome/654Atemp.stk: [testng] [2025-01-06 00:39:11,417] [pool-1-thread-11] Initializing /data/openjpeg/thumb_Bretagne1.jpg: [testng] [2025-01-06 00:39:11,575] [pool-1-thread-2] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk: [testng] [2025-01-06 00:39:14,008] [pool-1-thread-10] Initializing /data/openjpeg/thumb_Cevennes2.jpg: [testng] [2025-01-06 00:39:15,499] [pool-1-thread-11] Initializing /data/ome/tiffany.color.tiff: [testng] [2025-01-06 00:39:16,649] [pool-1-thread-8] Initializing /data/openjpeg/Facade.bmp: [testng] [2025-01-06 00:39:17,414] [pool-1-thread-1] Initializing /data/ome/compressed2ChZ.lsm: [testng] [2025-01-06 00:39:18,544] [pool-1-thread-5] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF: [testng] [2025-01-06 00:39:19,446] [pool-1-thread-10] Initializing /data/openjpeg/thumb_Cevennes1.jpg: [testng] [2025-01-06 00:39:20,187] [pool-1-thread-2] Initializing /data/openjpeg/FacadeERROPJW.bmp: [testng] [2025-01-06 00:39:21,321] [pool-1-thread-8] Initializing /data/openjpeg/Bretagne2.bmp: [testng] [2025-01-06 00:39:21,559] [pool-1-thread-10] Initializing /data/ome/t0_pos1-0_5x.lsm: [testng] [2025-01-06 00:39:22,036] [pool-1-thread-6] Initializing /data/sdub/sdub.pattern: [testng] [2025-01-06 00:39:29,298] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.ppm: [testng] [2025-01-06 00:39:29,738] [pool-1-thread-1] Initializing /data/openjpeg/Cevennes1.j2k: [testng] [2025-01-06 00:39:31,033] [pool-1-thread-11] Initializing /data/ome/C1midmusnorm.lsm: [testng] [2025-01-06 00:39:31,531] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Bretagne2.jpg: [testng] [2025-01-06 00:39:31,628] [pool-1-thread-5] Initializing /data/ome/cb_1.r3d: [testng] [2025-01-06 00:39:31,816] [pool-1-thread-2] Initializing /data/ome/C1.lsm: [testng] [2025-01-06 00:39:33,346] [pool-1-thread-8] Initializing /data/openjpeg/Rome.ppm: [testng] [2025-01-06 00:39:34,012] [pool-1-thread-4] Initializing /data/ome/Cpharynxzs1.lsm: [testng] [2025-01-06 00:39:35,237] [pool-1-thread-5] Initializing /data/openjpeg/thumb_Rome.jpg: [testng] [2025-01-06 00:39:35,400] [pool-1-thread-10] Initializing /data/ome/embryo.lsm: [testng] [2025-01-06 00:39:36,481] [pool-1-thread-8] Initializing /data/openjpeg/Cevennes2.jp2: [testng] [2025-01-06 00:39:37,340] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.bmp: [testng] [2025-01-06 00:39:38,122] [pool-1-thread-11] Initializing /data/openjpeg/Bretagne2.ppm: [testng] [2025-01-06 00:39:38,200] [pool-1-thread-5] Initializing /data/kidney_TFl/kidney_TFl.pattern: [testng] [2025-01-06 00:39:39,210] [pool-1-thread-2] Initializing /data/openjpeg/Cevennes2.ppm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3127, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 1 second Finished: SUCCESS