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Started by upstream project "BIOFORMATS-test-repo" build number 310 originally caused by: Started by upstream project "Trigger" build number 332 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4620411068937674819.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_49182_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:29:13,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:29:13,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:29:13,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:29:13,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:29:13,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:29:13,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:29:13,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:29:13,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:29:13,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:29:13,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:29:13,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:29:13,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:29:13,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:29:13,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:29:13,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:29:13,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:29:13,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:29:13,820 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:29:13,820 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:29:13,820 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:29:13,820 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:29:13,821 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:29:13,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-06 03:29:13,831] [main] java.version = 1.8.0_342 [testng] 03:29:13,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:29:13,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:13,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-06_03-29-13.log] [testng] 03:29:13,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2025-01-06 03:29:13,881] [main] testng.directory = /data [testng] [2025-01-06 03:29:13,881] [main] testng.configDirectory = /config [testng] [2025-01-06 03:29:13,893] [main] testng.multiplier = 1.0 [testng] [2025-01-06 03:29:13,893] [main] testng.in-memory = false [testng] [2025-01-06 03:29:13,893] [main] testng.allow-missing = false [testng] [2025-01-06 03:29:13,893] [main] user.language = fr [testng] [2025-01-06 03:29:13,893] [main] user.country = FR [testng] [2025-01-06 03:29:13,893] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-01-06 03:29:18,435] [main] ---------------------------------------- [testng] [2025-01-06 03:29:18,435] [main] Total files: 32 [testng] [2025-01-06 03:29:18,435] [main] Scan time: 4.541 s (141 ms/file) [testng] [2025-01-06 03:29:18,435] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-06 03:29:50,824] [pool-1-thread-1] Initializing /data/qa-29469/bad2.1sc: [testng] 03:29:50,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:29:50,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:50,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-06_03-29-50.log] [testng] 03:29:50,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7be4fa1c - End of configuration. [testng] [2025-01-06 03:29:51,418] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 03:29:51,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:29:51,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:51,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-06_03-29-51.log] [testng] 03:29:51,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bcb380d - End of configuration. [testng] [2025-01-06 03:29:52,194] [pool-1-thread-11] Initializing /data/david/Opened in imageJ.tiff: [testng] 03:29:52,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:29:52,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:52,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-06_03-29-52.log] [testng] 03:29:52,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1484a968 - End of configuration. [testng] [2025-01-06 03:29:54,571] [pool-1-thread-10] Initializing /data/qa-29469/bad3.1sc: [testng] 03:29:54,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:29:54,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:54,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-06_03-29-54.log] [testng] 03:29:54,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b87b391 - End of configuration. [testng] [2025-01-06 03:29:55,196] [pool-1-thread-9] Initializing /data/qa-29469/good.1sc: [testng] 03:29:55,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:29:55,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:55,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-06_03-29-55.log] [testng] 03:29:55,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b27d77 - End of configuration. [testng] [2025-01-06 03:29:55,796] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 03:29:55,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:29:55,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:55,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-06_03-29-55.log] [testng] 03:29:55,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b04be9b - End of configuration. [testng] [2025-01-06 03:29:58,810] [pool-1-thread-7] Initializing /data/geert/bad example1.jpg: [testng] 03:29:58,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:29:58,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:58,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-06_03-29-58.log] [testng] 03:29:58,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1267d126 - End of configuration. [testng] [2025-01-06 03:29:59,031] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] 03:29:59,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:29:59,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:59,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-06_03-29-59.log] [testng] 03:29:59,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642bb7c2 - End of configuration. [testng] [2025-01-06 03:30:01,240] [pool-1-thread-5] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 03:30:01,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:30:01,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:30:01,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-06_03-30-01.log] [testng] 03:30:01,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54fa0fa2 - End of configuration. [testng] [2025-01-06 03:30:01,724] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 03:30:01,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:30:01,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:30:01,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-06_03-30-01.log] [testng] 03:30:01,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e46e3b0 - End of configuration. [testng] [2025-01-06 03:30:03,499] [pool-1-thread-3] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] 03:30:03,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:30:03,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:30:03,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-06_03-30-03.log] [testng] 03:30:03,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2201bd27 - End of configuration. [testng] [2025-01-06 03:30:03,988] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 03:30:03,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:30:03,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:30:03,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-06_03-30-03.log] [testng] 03:30:03,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a0cbf8e - End of configuration. [testng] [2025-01-06 03:30:09,596] [pool-1-thread-3] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2025-01-06 03:30:10,260] [pool-1-thread-5] Initializing /data/keith/pg020410saur3.1sc: [testng] [2025-01-06 03:30:10,776] [pool-1-thread-12] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2025-01-06 03:30:12,808] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2025-01-06 03:30:13,387] [pool-1-thread-7] Initializing /data/qa-29459/bad.1sc: [testng] [2025-01-06 03:30:13,889] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2025-01-06 03:30:14,652] [pool-1-thread-1] Initializing /data/qa-29459/bad.jpg: [testng] [2025-01-06 03:30:14,814] [pool-1-thread-2] Initializing /data/geert/good example1.1sc: [testng] [2025-01-06 03:30:21,603] [pool-1-thread-5] Initializing /data/geert/good example1.1sc.jpg: [testng] [2025-01-06 03:30:21,882] [pool-1-thread-3] Initializing /data/geert/bad example1.1sc: [testng] [2025-01-06 03:30:22,490] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] [2025-01-06 03:30:23,131] [pool-1-thread-7] Initializing /data/adrian/test_img.1sc: [testng] [2025-01-06 03:30:23,736] [pool-1-thread-10] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2025-01-06 03:30:25,861] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2025-01-06 03:30:26,383] [pool-1-thread-9] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-01-06 03:30:26,861] [pool-1-thread-2] Initializing /data/keith/test2.1sc: [testng] [2025-01-06 03:30:27,341] [pool-1-thread-8] Initializing /data/samples/imagesEight.1sc: [testng] [2025-01-06 03:30:28,067] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2025-01-06 03:30:28,257] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-01-06 03:30:32,660] [pool-1-thread-5] Initializing /data/keith/test.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 30 seconds Finished: SUCCESS