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Started by upstream project "BIOFORMATS-test-repo" build number 311 originally caused by: Started by upstream project "Trigger" build number 333 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8334889431821270876.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49213_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:21:10,629 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:10,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:21:10,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:10,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:10,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:10,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:10,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:10,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:10,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:10,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:10,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:10,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:10,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:10,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:10,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:10,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:10,830 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:10,830 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:10,830 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:10,831 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:10,831 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:21:10,832 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:21:10,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-07 00:21:10,843] [main] java.version = 11.0.16 [testng] 00:21:10,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:10,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:10,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-07_00-21-10.log] [testng] 00:21:10,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2025-01-07 00:21:10,891] [main] testng.directory = /data [testng] [2025-01-07 00:21:10,891] [main] testng.configDirectory = /config [testng] [2025-01-07 00:21:10,901] [main] testng.multiplier = 1.0 [testng] [2025-01-07 00:21:10,902] [main] testng.in-memory = false [testng] [2025-01-07 00:21:10,902] [main] testng.allow-missing = false [testng] [2025-01-07 00:21:10,902] [main] user.language = en [testng] [2025-01-07 00:21:10,902] [main] user.country = ${user.country} [testng] [2025-01-07 00:21:10,902] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-07 00:21:11,681] [main] ---------------------------------------- [testng] [2025-01-07 00:21:11,681] [main] Total files: 36 [testng] [2025-01-07 00:21:11,681] [main] Scan time: 0.779 s (21 ms/file) [testng] [2025-01-07 00:21:11,681] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-07 00:21:13,187] [pool-1-thread-1] Initializing /data/generated/mri-stack22.pcx: [testng] 00:21:13,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:21:13,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-07_00-21-13.log] [testng] 00:21:13,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35851691 - End of configuration. [testng] [2025-01-07 00:21:13,256] [pool-1-thread-12] Initializing /data/generated/mri-stack16.pcx: [testng] 00:21:13,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:13,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-07_00-21-13.log] [testng] 00:21:13,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612c49f1 - End of configuration. [testng] [2025-01-07 00:21:13,270] [pool-1-thread-11] Initializing /data/generated/mri-stack3.pcx: [testng] 00:21:13,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:13,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-07_00-21-13.log] [testng] 00:21:13,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43948075 - End of configuration. [testng] [2025-01-07 00:21:13,282] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx: [testng] 00:21:13,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:13,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-07_00-21-13.log] [testng] 00:21:13,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e1f4f9f - End of configuration. [testng] [2025-01-07 00:21:13,292] [pool-1-thread-9] Initializing /data/generated/mri-stack4.pcx: [testng] 00:21:13,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:13,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-07_00-21-13.log] [testng] 00:21:13,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f823a69 - End of configuration. [testng] [2025-01-07 00:21:13,304] [pool-1-thread-8] Initializing /data/generated/mri-stack13.pcx: [testng] 00:21:13,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:13,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-07_00-21-13.log] [testng] 00:21:13,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58bb5c37 - End of configuration. [testng] [2025-01-07 00:21:13,316] [pool-1-thread-7] Initializing /data/generated/mri-stack18.pcx: [testng] 00:21:13,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:13,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-07_00-21-13.log] [testng] 00:21:13,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281dd3e8 - End of configuration. [testng] [2025-01-07 00:21:13,325] [pool-1-thread-6] Initializing /data/generated/mri-stack14.pcx: [testng] 00:21:13,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:13,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-07_00-21-13.log] [testng] 00:21:13,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50413c65 - End of configuration. [testng] [2025-01-07 00:21:13,335] [pool-1-thread-5] Initializing /data/generated/mri-stack26.pcx: [testng] 00:21:13,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:13,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-07_00-21-13.log] [testng] 00:21:13,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ca53c0 - End of configuration. [testng] [2025-01-07 00:21:13,344] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 00:21:13,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:13,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-07_00-21-13.log] [testng] 00:21:13,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665afd2 - End of configuration. [testng] [2025-01-07 00:21:13,356] [pool-1-thread-3] Initializing /data/generated/mri-stack0.pcx: [testng] 00:21:13,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:13,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-07_00-21-13.log] [testng] 00:21:13,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2af77d17 - End of configuration. [testng] [2025-01-07 00:21:13,366] [pool-1-thread-2] Initializing /data/generated/mri-stack10.pcx: [testng] 00:21:13,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:13,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-07_00-21-13.log] [testng] 00:21:13,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f805497 - End of configuration. [testng] [2025-01-07 00:21:15,826] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] [2025-01-07 00:21:15,834] [pool-1-thread-3] Initializing /data/generated/mri-stack5.pcx: [testng] [2025-01-07 00:21:15,843] [pool-1-thread-10] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2025-01-07 00:21:15,854] [pool-1-thread-9] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2025-01-07 00:21:15,867] [pool-1-thread-1] Initializing /data/generated/mri-stack2.pcx: [testng] [2025-01-07 00:21:15,874] [pool-1-thread-2] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-01-07 00:21:15,884] [pool-1-thread-5] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2025-01-07 00:21:15,893] [pool-1-thread-6] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-01-07 00:21:15,900] [pool-1-thread-11] Initializing /data/generated/mri-stack15.pcx: [testng] [2025-01-07 00:21:15,908] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] [2025-01-07 00:21:15,915] [pool-1-thread-7] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-01-07 00:21:15,923] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-01-07 00:21:16,511] [pool-1-thread-6] Initializing /data/generated/mri-stack11.pcx: [testng] [2025-01-07 00:21:16,517] [pool-1-thread-11] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-01-07 00:21:16,572] [pool-1-thread-8] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-01-07 00:21:16,625] [pool-1-thread-1] Initializing /data/generated/mri-stack17.pcx: [testng] [2025-01-07 00:21:16,679] [pool-1-thread-4] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-01-07 00:21:16,703] [pool-1-thread-3] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-01-07 00:21:16,728] [pool-1-thread-12] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-01-07 00:21:16,914] [pool-1-thread-6] Initializing /data/generated/mri-stack8.pcx: [testng] [2025-01-07 00:21:16,930] [pool-1-thread-11] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-01-07 00:21:16,957] [pool-1-thread-8] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-01-07 00:21:17,041] [pool-1-thread-10] Initializing /data/generated/mri-stack9.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS