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Started by upstream project "BIOFORMATS-test-repo" build number 311 originally caused by: Started by upstream project "Trigger" build number 333 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5231585831421422213.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49229_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:24:40,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:24:40,507 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:24:40,507 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:40,508 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:40,509 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:24:40,509 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:24:40,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:24:40,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:40,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:40,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:24:40,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:24:40,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:24:40,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:24:40,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:24:40,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:24:40,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:24:40,759 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:24:40,759 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:24:40,759 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:24:40,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:24:40,760 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:24:40,761 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:24:40,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 251 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-07 00:24:40,771] [main] java.version = 11.0.16 [testng] 00:24:40,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:24:40,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:40,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-07_00-24-40.log] [testng] 00:24:40,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2025-01-07 00:24:40,828] [main] testng.directory = /data [testng] [2025-01-07 00:24:40,828] [main] testng.configDirectory = /config [testng] [2025-01-07 00:24:40,839] [main] testng.multiplier = 1.0 [testng] [2025-01-07 00:24:40,841] [main] testng.in-memory = false [testng] [2025-01-07 00:24:40,841] [main] testng.allow-missing = false [testng] [2025-01-07 00:24:40,841] [main] user.language = en [testng] [2025-01-07 00:24:40,841] [main] user.country = ${user.country} [testng] [2025-01-07 00:24:40,841] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-07 00:25:04,853] [main] ---------------------------------------- [testng] [2025-01-07 00:25:04,853] [main] Total files: 21 [testng] [2025-01-07 00:25:04,853] [main] Scan time: 24.012 s (1143 ms/file) [testng] [2025-01-07 00:25:04,853] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-07 00:25:40,958] [pool-1-thread-1] Initializing /data/stefan/001_q14.txt: [testng] 00:25:40,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:25:40,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:40,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-07_00-25-40.log] [testng] 00:25:40,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f7fddfb - End of configuration. [testng] [2025-01-07 00:25:42,226] [pool-1-thread-12] Initializing /data/stefan/001_q01.txt: [testng] 00:25:42,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:25:42,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:42,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-07_00-25-42.log] [testng] 00:25:42,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d3c329d - End of configuration. [testng] [2025-01-07 00:25:43,094] [pool-1-thread-11] Initializing /data/stefan/001_q05.txt: [testng] 00:25:43,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:25:43,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:43,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-07_00-25-43.log] [testng] 00:25:43,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@be54874 - End of configuration. [testng] [2025-01-07 00:25:44,392] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt: [testng] 00:25:44,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:25:44,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:44,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-07_00-25-44.log] [testng] 00:25:44,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@269731dc - End of configuration. [testng] [2025-01-07 00:25:48,621] [pool-1-thread-9] Initializing /data/stefan/001_q16.txt: [testng] 00:25:48,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:25:48,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:48,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-07_00-25-48.log] [testng] 00:25:48,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26813c7d - End of configuration. [testng] [2025-01-07 00:25:50,920] [pool-1-thread-8] Initializing /data/stefan/001_q17.txt: [testng] 00:25:50,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:25:50,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:50,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-07_00-25-50.log] [testng] 00:25:50,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a14bbd - End of configuration. [testng] [2025-01-07 00:25:53,193] [pool-1-thread-7] Initializing /data/stefan/001_q18.txt: [testng] 00:25:53,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:25:53,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:53,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-07_00-25-53.log] [testng] 00:25:53,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e9e690 - End of configuration. [testng] [2025-01-07 00:25:55,447] [pool-1-thread-6] Initializing /data/stefan/001_q07.txt: [testng] 00:25:55,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:25:55,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:55,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-07_00-25-55.log] [testng] 00:25:55,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f3b286 - End of configuration. [testng] [2025-01-07 00:25:58,547] [pool-1-thread-5] Initializing /data/stefan/001_q15.txt: [testng] 00:25:58,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:25:58,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:58,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-07_00-25-58.log] [testng] 00:25:58,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b14b2d - End of configuration. [testng] [2025-01-07 00:25:59,690] [pool-1-thread-4] Initializing /data/stefan/001_q06.txt: [testng] 00:25:59,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:25:59,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:59,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-07_00-25-59.log] [testng] 00:25:59,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14aeaefc - End of configuration. [testng] [2025-01-07 00:26:01,497] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt: [testng] 00:26:01,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:26:01,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:01,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-07_00-26-01.log] [testng] 00:26:01,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a74676 - End of configuration. [testng] [2025-01-07 00:26:02,578] [pool-1-thread-2] Initializing /data/stefan/001_q04.txt: [testng] 00:26:02,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:26:02,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:02,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-07_00-26-02.log] [testng] 00:26:02,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53df713e - End of configuration. [testng] [2025-01-07 00:26:22,926] [pool-1-thread-12] Initializing /data/stefan/001_q09.txt: [testng] [2025-01-07 00:26:25,275] [pool-1-thread-2] Initializing /data/stefan/001_q13.txt: [testng] [2025-01-07 00:26:26,281] [pool-1-thread-3] Initializing /data/stefan/001_q12.txt: [testng] [2025-01-07 00:26:28,313] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt: [testng] [2025-01-07 00:26:29,877] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt: [testng] [2025-01-07 00:26:31,614] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 21 seconds Finished: SUCCESS