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Started by upstream project "BIOFORMATS-test-repo" build number 312 originally caused by: Started by upstream project "Trigger" build number 334 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins48711324136494297.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49394_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:24:37,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:24:37,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:24:37,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:37,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:37,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:24:37,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:24:37,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:24:37,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:37,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:37,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:24:37,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:24:37,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:24:37,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:24:37,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:24:37,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:24:37,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:24:37,770 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:24:37,770 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:24:37,770 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:24:37,770 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:24:37,770 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:24:37,771 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:24:37,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 218 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-08 00:24:37,781] [main] java.version = 17.0.2 [testng] 00:24:37,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:24:37,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:37,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-08_00-24-37.log] [testng] 00:24:37,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-08 00:24:37,830] [main] testng.directory = /data [testng] [2025-01-08 00:24:37,830] [main] testng.configDirectory = /config [testng] [2025-01-08 00:24:37,839] [main] testng.multiplier = 1.0 [testng] [2025-01-08 00:24:37,840] [main] testng.in-memory = false [testng] [2025-01-08 00:24:37,840] [main] testng.allow-missing = false [testng] [2025-01-08 00:24:37,840] [main] user.language = en [testng] [2025-01-08 00:24:37,840] [main] user.country = ${user.country} [testng] [2025-01-08 00:24:37,841] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-08 00:24:58,375] [main] ---------------------------------------- [testng] [2025-01-08 00:24:58,375] [main] Total files: 21 [testng] [2025-01-08 00:24:58,375] [main] Scan time: 20.534 s (977 ms/file) [testng] [2025-01-08 00:24:58,375] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-08 00:25:39,629] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 00:25:39,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:25:39,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:39,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-08_00-25-39.log] [testng] 00:25:39,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5616d249 - End of configuration. [testng] [2025-01-08 00:25:41,218] [pool-1-thread-12] Initializing /data/stefan/001_q17.txt: [testng] 00:25:41,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:25:41,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:41,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-08_00-25-41.log] [testng] 00:25:41,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b4b1630 - End of configuration. [testng] [2025-01-08 00:25:43,000] [pool-1-thread-11] Initializing /data/stefan/001_q16.txt: [testng] 00:25:43,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:25:43,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:43,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-08_00-25-43.log] [testng] 00:25:43,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dcd8430 - End of configuration. [testng] [2025-01-08 00:25:44,454] [pool-1-thread-10] Initializing /data/stefan/001_q10.txt: [testng] 00:25:44,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:25:44,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:44,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-08_00-25-44.log] [testng] 00:25:44,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153d4e81 - End of configuration. [testng] [2025-01-08 00:25:47,633] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] 00:25:47,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:25:47,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:47,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-08_00-25-47.log] [testng] 00:25:47,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28213936 - End of configuration. [testng] [2025-01-08 00:25:51,486] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt: [testng] 00:25:51,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:25:51,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:51,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-08_00-25-51.log] [testng] 00:25:51,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60fde3df - End of configuration. [testng] [2025-01-08 00:25:54,973] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 00:25:54,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:25:54,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:54,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-08_00-25-54.log] [testng] 00:25:54,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70f1045d - End of configuration. [testng] [2025-01-08 00:25:59,190] [pool-1-thread-6] Initializing /data/stefan/001_q07.txt: [testng] 00:25:59,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:25:59,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:59,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-08_00-25-59.log] [testng] 00:25:59,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ef6910 - End of configuration. [testng] [2025-01-08 00:26:02,150] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt: [testng] 00:26:02,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:26:02,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:02,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-08_00-26-02.log] [testng] 00:26:02,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1747ff31 - End of configuration. [testng] [2025-01-08 00:26:04,523] [pool-1-thread-4] Initializing /data/stefan/001_q09.txt: [testng] 00:26:04,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:26:04,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:04,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-08_00-26-04.log] [testng] 00:26:04,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fc0c9a - End of configuration. [testng] [2025-01-08 00:26:06,363] [pool-1-thread-3] Initializing /data/stefan/001_q06.txt: [testng] 00:26:06,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:26:06,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:06,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-08_00-26-06.log] [testng] 00:26:06,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44c0d9a2 - End of configuration. [testng] [2025-01-08 00:26:07,404] [pool-1-thread-2] Initializing /data/stefan/001_q14.txt: [testng] 00:26:07,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:26:07,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:07,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-08_00-26-07.log] [testng] 00:26:07,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7980fa1e - End of configuration. [testng] [2025-01-08 00:26:33,110] [pool-1-thread-7] Initializing /data/stefan/001_q05.txt: [testng] [2025-01-08 00:26:35,234] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt: [testng] [2025-01-08 00:26:36,538] [pool-1-thread-2] Initializing /data/stefan/001_q03.txt: [testng] [2025-01-08 00:26:38,056] [pool-1-thread-12] Initializing /data/stefan/001_q02.txt: [testng] [2025-01-08 00:26:39,129] [pool-1-thread-1] Initializing /data/stefan/001_q11.txt: [testng] [2025-01-08 00:26:41,524] [pool-1-thread-11] Initializing /data/stefan/001_q18.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 42 seconds Finished: SUCCESS