Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 312
originally caused by:
 Started by upstream project "Trigger" build number 334
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16522983496563933386.sh
+ '[' ecat7 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49449_merge_ci -v /uod/idr/repos/curated/ecat7:/data -v /uod/idr-scratch/merge-ci/curated/ecat7:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:42:04,109 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:42:04,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 01:42:04,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:42:04,111 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:42:04,112 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:42:04,112 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:42:04,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:42:04,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:42:04,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:42:04,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:42:04,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:42:04,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:42:04,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:42:04,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:42:04,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:42:04,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:42:04,313 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:42:04,314 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:42:04,314 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:42:04,314 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:42:04,314 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 01:42:04,315 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 01:42:04,315 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-08 01:42:04,324] [main] java.version = 17.0.2
   [testng] 01:42:04,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:42:04,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:04,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-08_01-42-04.log]
   [testng] 01:42:04,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2025-01-08 01:42:04,373] [main] testng.directory = /data
   [testng] [2025-01-08 01:42:04,373] [main] testng.configDirectory = /config
   [testng] [2025-01-08 01:42:04,381] [main] testng.multiplier = 1.0
   [testng] [2025-01-08 01:42:04,382] [main] testng.in-memory = false
   [testng] [2025-01-08 01:42:04,382] [main] testng.allow-missing = false
   [testng] [2025-01-08 01:42:04,382] [main] user.language = en
   [testng] [2025-01-08 01:42:04,382] [main] user.country = ${user.country}
   [testng] [2025-01-08 01:42:04,382] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-08 01:42:06,478] [main] ----------------------------------------
   [testng] [2025-01-08 01:42:06,478] [main] Total files: 9
   [testng] [2025-01-08 01:42:06,478] [main] Scan time: 2.095 s (232 ms/file)
   [testng] [2025-01-08 01:42:06,478] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 8 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-08 01:42:13,566] [pool-1-thread-1] Initializing /data/mark/FP609_1_112007_bl1.v: 
   [testng] 01:42:13,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:42:13,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:13,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-08_01-42-13.log]
   [testng] 01:42:13,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41cb619c - End of configuration.
   [testng] [2025-01-08 01:42:14,053] [pool-1-thread-8] Initializing /data/public/torsten/gradient-512x512x10.v: 
   [testng] 01:42:14,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:42:14,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:14,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-08_01-42-14.log]
   [testng] 01:42:14,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2471d10e - End of configuration.
   [testng] [2025-01-08 01:42:14,502] [pool-1-thread-7] Initializing /data/mark/MotionTracker_94_ac1_de3.v: 
   [testng] 01:42:14,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:42:14,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:14,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-08_01-42-14.log]
   [testng] 01:42:14,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4367b6c8 - End of configuration.
   [testng] [2025-01-08 01:42:15,065] [pool-1-thread-6] Initializing /data/mark/FP609_2_112107_bl2.v: 
   [testng] 01:42:15,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:42:15,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:15,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-08_01-42-15.log]
   [testng] 01:42:15,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@271a9712 - End of configuration.
   [testng] [2025-01-08 01:42:16,288] [pool-1-thread-5] Initializing /data/mark/FP609_2_112107_bl1.v: 
   [testng] 01:42:16,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:42:16,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:16,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-08_01-42-16.log]
   [testng] 01:42:16,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@517b993d - End of configuration.
   [testng] [2025-01-08 01:42:16,709] [pool-1-thread-4] Initializing /data/torsten/ecat7-ver70-testfile.v: 
   [testng] 01:42:16,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:42:16,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:16,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-08_01-42-16.log]
   [testng] 01:42:16,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cb1885c - End of configuration.
   [testng] [2025-01-08 01:42:17,158] [pool-1-thread-3] Initializing /data/mark/motiontracker.mnc: 
   [testng] 01:42:17,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:42:17,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:17,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-08_01-42-17.log]
   [testng] 01:42:17,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@613f733 - End of configuration.
   [testng] [2025-01-08 01:42:17,626] [pool-1-thread-2] Initializing /data/mark/FP609_1_112007_bl2.v: 
   [testng] 01:42:17,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:42:17,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:42:17,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-08_01-42-17.log]
   [testng] 01:42:17,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f69a3 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 424, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 24 seconds
Finished: SUCCESS