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Started by upstream project "BIOFORMATS-test-repo" build number 312 originally caused by: Started by upstream project "Trigger" build number 334 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14143847070509827370.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49534_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:59:59,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:59:59,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:59:59,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:59:59,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:59:59,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:59:59,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:59:59,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:59:59,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:59:59,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:59:59,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:59:59,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:59:59,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:59:59,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:59:59,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:59:59,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:59:59,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:59:59,971 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:59:59,971 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:59:59,971 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:59:59,971 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:59:59,971 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:59:59,972 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:59:59,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-08 04:59:59,981] [main] java.version = 17.0.2 [testng] 04:59:59,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:59:59,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:00,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-08_05-00-00.log] [testng] 05:00:00,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-08 05:00:00,028] [main] testng.directory = /data [testng] [2025-01-08 05:00:00,029] [main] testng.configDirectory = /config [testng] [2025-01-08 05:00:00,037] [main] testng.multiplier = 1.0 [testng] [2025-01-08 05:00:00,038] [main] testng.in-memory = false [testng] [2025-01-08 05:00:00,038] [main] testng.allow-missing = false [testng] [2025-01-08 05:00:00,038] [main] user.language = en [testng] [2025-01-08 05:00:00,038] [main] user.country = ${user.country} [testng] [2025-01-08 05:00:00,039] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-08 05:00:27,769] [main] ---------------------------------------- [testng] [2025-01-08 05:00:27,769] [main] Total files: 31 [testng] [2025-01-08 05:00:27,769] [main] Scan time: 27.73 s (894 ms/file) [testng] [2025-01-08 05:00:27,770] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-08 05:01:03,714] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 05:01:03,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:01:03,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:03,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-08_05-01-03.log] [testng] 05:01:03,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d017d11 - End of configuration. [testng] [2025-01-08 05:01:04,892] [pool-1-thread-12] Initializing /data/vikram/Captured 3.jp2: [testng] 05:01:04,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:01:04,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:04,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-08_05-01-04.log] [testng] 05:01:04,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35ec45c8 - End of configuration. [testng] [2025-01-08 05:01:05,798] [pool-1-thread-11] Initializing /data/david/C1R1_FOS.jp2: [testng] 05:01:05,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:01:05,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:05,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-08_05-01-05.log] [testng] 05:01:05,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24a8deb4 - End of configuration. [testng] [2025-01-08 05:01:06,482] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jp2: [testng] 05:01:06,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:01:06,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:06,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-08_05-01-06.log] [testng] 05:01:06,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c2447cf - End of configuration. [testng] [2025-01-08 05:01:07,667] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 05:01:07,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:01:07,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:07,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-08_05-01-07.log] [testng] 05:01:07,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76ca81ad - End of configuration. [testng] [2025-01-08 05:01:09,213] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 05:01:09,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:01:09,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:09,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-08_05-01-09.log] [testng] 05:01:09,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ffe561c - End of configuration. [testng] [2025-01-08 05:01:11,346] [pool-1-thread-7] Initializing /data/david/multichannel-2d test.jp2: [testng] 05:01:11,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:01:11,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:11,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-08_05-01-11.log] [testng] 05:01:11,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d0499a - End of configuration. [testng] [2025-01-08 05:01:12,033] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jpc: [testng] 05:01:12,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:01:12,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:12,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-08_05-01-12.log] [testng] 05:01:12,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cdec01 - End of configuration. [testng] [2025-01-08 05:01:12,602] [pool-1-thread-5] Initializing /data/kraig/head.jp2: [testng] 05:01:12,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:01:12,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:12,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-08_05-01-12.log] [testng] 05:01:12,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3966ac - End of configuration. [testng] [2025-01-08 05:01:13,232] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf: [testng] 05:01:13,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:01:13,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:13,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-08_05-01-13.log] [testng] 05:01:13,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23b2588f - End of configuration. [testng] [2025-01-08 05:01:13,836] [pool-1-thread-3] Initializing /data/frans/flower.jp2: [testng] 05:01:13,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:01:13,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:13,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-08_05-01-13.log] [testng] 05:01:13,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a18e3a - End of configuration. [testng] [2025-01-08 05:01:14,426] [pool-1-thread-2] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 05:01:14,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:01:14,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:14,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-08_05-01-14.log] [testng] 05:01:14,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf3890d - End of configuration. [testng] [2025-01-08 05:01:20,881] [pool-1-thread-6] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-01-08 05:01:23,179] [pool-1-thread-12] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2025-01-08 05:01:23,979] [pool-1-thread-10] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-01-08 05:01:24,583] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-01-08 05:01:30,302] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2025-01-08 05:01:32,072] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] [2025-01-08 05:01:34,856] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-01-08 05:01:36,358] [pool-1-thread-4] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-01-08 05:01:36,919] [pool-1-thread-6] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-01-08 05:01:38,741] [pool-1-thread-3] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-01-08 05:01:43,563] [pool-1-thread-6] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-01-08 05:01:45,359] [pool-1-thread-3] Initializing /data/david/000000_000001.jpx: [testng] [2025-01-08 05:01:46,478] [pool-1-thread-5] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-01-08 05:01:47,553] [pool-1-thread-12] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2025-01-08 05:01:48,172] [pool-1-thread-4] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2025-01-08 05:01:51,573] [pool-1-thread-11] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-01-08 05:01:55,039] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-01-08 05:02:00,553] [pool-1-thread-12] Initializing /data/vikram/Captured 1.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 57 seconds Finished: SUCCESS