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Started by upstream project "BIOFORMATS-test-repo" build number 313 originally caused by: Started by upstream project "Trigger" build number 335 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7958171250471088795.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49543_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:15:13,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:15:13,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:15:13,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:15:13,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:15:13,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:15:13,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:15:13,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:15:13,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:15:13,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:15:13,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:15:13,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:15:13,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:15:13,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:15:13,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:15:13,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:15:13,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:15:13,811 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:15:13,811 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:15:13,811 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:15:13,812 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:15:13,812 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:15:13,812 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:15:13,812 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 246 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-09 01:15:13,821] [main] java.version = 21 [testng] 01:15:13,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:15:13,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:13,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-09_01-15-13.log] [testng] 01:15:13,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-09 01:15:13,979] [main] testng.directory = /data [testng] [2025-01-09 01:15:13,979] [main] testng.configDirectory = /config [testng] [2025-01-09 01:15:13,988] [main] testng.multiplier = 1.0 [testng] [2025-01-09 01:15:13,988] [main] testng.in-memory = false [testng] [2025-01-09 01:15:13,988] [main] testng.allow-missing = false [testng] [2025-01-09 01:15:13,988] [main] user.language = en [testng] [2025-01-09 01:15:13,988] [main] user.country = ${user.country} [testng] [2025-01-09 01:15:13,988] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-09 01:15:14,841] [main] ---------------------------------------- [testng] [2025-01-09 01:15:14,841] [main] Total files: 36 [testng] [2025-01-09 01:15:14,841] [main] Scan time: 0.853 s (23 ms/file) [testng] [2025-01-09 01:15:14,842] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-09 01:15:16,504] [pool-1-thread-1] Initializing /data/generated/mri-stack21.pcx: [testng] 01:15:16,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:15:16,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-09_01-15-16.log] [testng] 01:15:16,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e295cbb - End of configuration. [testng] [2025-01-09 01:15:16,521] [pool-1-thread-12] Initializing /data/generated/mri-stack2.pcx: [testng] 01:15:16,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:15:16,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-09_01-15-16.log] [testng] 01:15:16,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de033c5 - End of configuration. [testng] [2025-01-09 01:15:16,537] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx: [testng] 01:15:16,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:15:16,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-09_01-15-16.log] [testng] 01:15:16,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ce1dcf - End of configuration. [testng] [2025-01-09 01:15:16,550] [pool-1-thread-10] Initializing /data/generated/mri-stack1.pcx: [testng] 01:15:16,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:15:16,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-09_01-15-16.log] [testng] 01:15:16,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331fd25 - End of configuration. [testng] [2025-01-09 01:15:16,562] [pool-1-thread-9] Initializing /data/generated/mri-stack25.pcx: [testng] 01:15:16,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:15:16,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-09_01-15-16.log] [testng] 01:15:16,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2968db - End of configuration. [testng] [2025-01-09 01:15:16,574] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 01:15:16,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:15:16,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-09_01-15-16.log] [testng] 01:15:16,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420b429d - End of configuration. [testng] [2025-01-09 01:15:16,591] [pool-1-thread-7] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] 01:15:16,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:15:16,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-09_01-15-16.log] [testng] 01:15:16,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f13b924 - End of configuration. [testng] [2025-01-09 01:15:16,608] [pool-1-thread-6] Initializing /data/generated/mri-stack18.pcx: [testng] 01:15:16,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:15:16,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-09_01-15-16.log] [testng] 01:15:16,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55f12b9 - End of configuration. [testng] [2025-01-09 01:15:16,625] [pool-1-thread-5] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 01:15:16,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:15:16,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-09_01-15-16.log] [testng] 01:15:16,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@747af8ff - End of configuration. [testng] [2025-01-09 01:15:16,644] [pool-1-thread-4] Initializing /data/generated/mri-stack26.pcx: [testng] 01:15:16,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:15:16,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-09_01-15-16.log] [testng] 01:15:16,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e867699 - End of configuration. [testng] [2025-01-09 01:15:16,659] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] 01:15:16,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:15:16,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-09_01-15-16.log] [testng] 01:15:16,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a26865 - End of configuration. [testng] [2025-01-09 01:15:16,672] [pool-1-thread-2] Initializing /data/generated/mri-stack16.pcx: [testng] 01:15:16,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:15:16,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-09_01-15-16.log] [testng] 01:15:16,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a3a18c5 - End of configuration. [testng] [2025-01-09 01:15:19,924] [pool-1-thread-10] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-01-09 01:15:19,937] [pool-1-thread-3] Initializing /data/generated/mri-stack7.pcx: [testng] [2025-01-09 01:15:19,948] [pool-1-thread-12] Initializing /data/generated/mri-stack8.pcx: [testng] [2025-01-09 01:15:19,957] [pool-1-thread-8] Initializing /data/generated/mri-stack0.pcx: [testng] [2025-01-09 01:15:19,966] [pool-1-thread-1] Initializing /data/generated/mri-stack23.pcx: [testng] [2025-01-09 01:15:19,975] [pool-1-thread-2] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2025-01-09 01:15:19,985] [pool-1-thread-5] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-01-09 01:15:19,997] [pool-1-thread-6] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-01-09 01:15:20,010] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] [2025-01-09 01:15:20,021] [pool-1-thread-11] Initializing /data/generated/mri-stack15.pcx: [testng] [2025-01-09 01:15:20,033] [pool-1-thread-4] Initializing /data/generated/mri-stack4.pcx: [testng] [2025-01-09 01:15:20,043] [pool-1-thread-7] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-01-09 01:15:20,957] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-01-09 01:15:20,969] [pool-1-thread-10] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-01-09 01:15:20,989] [pool-1-thread-1] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-01-09 01:15:21,002] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-01-09 01:15:21,022] [pool-1-thread-3] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-01-09 01:15:21,037] [pool-1-thread-4] Initializing /data/generated/mri-stack13.pcx: [testng] [2025-01-09 01:15:21,059] [pool-1-thread-12] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-01-09 01:15:21,094] [pool-1-thread-11] Initializing /data/generated/mri-stack5.pcx: [testng] [2025-01-09 01:15:21,122] [pool-1-thread-7] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-01-09 01:15:21,155] [pool-1-thread-9] Initializing /data/generated/mri-stack11.pcx: [testng] [2025-01-09 01:15:21,427] [pool-1-thread-2] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS