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Started by upstream project "BIOFORMATS-test-repo" build number 313 originally caused by: Started by upstream project "Trigger" build number 335 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins664456658325975322.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49568_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:23:06,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:06,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:23:06,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:06,048 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:06,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:06,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:06,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:06,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:06,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:06,050 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:06,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:06,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:06,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:06,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:06,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:06,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:06,243 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:06,243 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:06,243 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:06,243 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:06,243 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:23:06,244 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:23:06,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-09 01:23:06,253] [main] java.version = 21 [testng] 01:23:06,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:06,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-09_01-23-06.log] [testng] 01:23:06,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-09 01:23:06,302] [main] testng.directory = /data [testng] [2025-01-09 01:23:06,302] [main] testng.configDirectory = /config [testng] [2025-01-09 01:23:06,311] [main] testng.multiplier = 1.0 [testng] [2025-01-09 01:23:06,311] [main] testng.in-memory = false [testng] [2025-01-09 01:23:06,311] [main] testng.allow-missing = false [testng] [2025-01-09 01:23:06,311] [main] user.language = en [testng] [2025-01-09 01:23:06,311] [main] user.country = ${user.country} [testng] [2025-01-09 01:23:06,311] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-09 01:23:07,337] [main] ---------------------------------------- [testng] [2025-01-09 01:23:07,337] [main] Total files: 31 [testng] [2025-01-09 01:23:07,337] [main] Scan time: 1.026 s (33 ms/file) [testng] [2025-01-09 01:23:07,337] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-09 01:23:11,624] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:23:11,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:11,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:11,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-09_01-23-11.log] [testng] 01:23:11,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@345f9de9 - End of configuration. [testng] [2025-01-09 01:23:11,708] [pool-1-thread-12] Initializing /data/curtis/image4.bmp: [testng] 01:23:11,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:11,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:11,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-09_01-23-11.log] [testng] 01:23:11,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7555383f - End of configuration. [testng] [2025-01-09 01:23:11,900] [pool-1-thread-11] Initializing /data/big-images/8kx8k.bmp: [testng] 01:23:11,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:11,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:11,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-09_01-23-11.log] [testng] 01:23:11,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5180dc - End of configuration. [testng] [2025-01-09 01:23:11,976] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] 01:23:11,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:11,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:11,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-09_01-23-11.log] [testng] 01:23:11,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ebff2cd - End of configuration. [testng] [2025-01-09 01:23:12,052] [pool-1-thread-9] Initializing /data/curtis/image5.bmp: [testng] 01:23:12,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:12,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-09_01-23-12.log] [testng] 01:23:12,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e54d4a2 - End of configuration. [testng] [2025-01-09 01:23:12,125] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] 01:23:12,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:12,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-09_01-23-12.log] [testng] 01:23:12,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@303ad8a6 - End of configuration. [testng] [2025-01-09 01:23:12,235] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:23:12,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:12,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-09_01-23-12.log] [testng] 01:23:12,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6114fc2c - End of configuration. [testng] [2025-01-09 01:23:12,383] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] 01:23:12,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:12,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-09_01-23-12.log] [testng] 01:23:12,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fd22376 - End of configuration. [testng] [2025-01-09 01:23:12,455] [pool-1-thread-5] Initializing /data/curtis/image3.bmp: [testng] 01:23:12,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:12,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-09_01-23-12.log] [testng] 01:23:12,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c285275 - End of configuration. [testng] [2025-01-09 01:23:12,532] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] 01:23:12,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:12,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-09_01-23-12.log] [testng] 01:23:12,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79fcc718 - End of configuration. [testng] [2025-01-09 01:23:12,712] [pool-1-thread-3] Initializing /data/curtis/image2.bmp: [testng] 01:23:12,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:12,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-09_01-23-12.log] [testng] 01:23:12,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc643e6 - End of configuration. [testng] [2025-01-09 01:23:12,793] [pool-1-thread-2] Initializing /data/curtis/image1.bmp: [testng] 01:23:12,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:12,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:12,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-09_01-23-12.log] [testng] 01:23:12,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0120d8 - End of configuration. [testng] [2025-01-09 01:23:15,838] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2025-01-09 01:23:15,889] [pool-1-thread-12] Initializing /data/stephane/holo0908.bmp: [testng] [2025-01-09 01:23:15,940] [pool-1-thread-4] Initializing /data/ticket-12971/foo.bmp: [testng] [2025-01-09 01:23:15,995] [pool-1-thread-9] Initializing /data/bk/ch_00.bmp: [testng] [2025-01-09 01:23:16,048] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2025-01-09 01:23:16,103] [pool-1-thread-5] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2025-01-09 01:23:16,161] [pool-1-thread-2] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2025-01-09 01:23:16,240] [pool-1-thread-6] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] [2025-01-09 01:23:16,326] [pool-1-thread-8] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2025-01-09 01:23:16,408] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2025-01-09 01:23:17,411] [pool-1-thread-7] Initializing /data/big-images/6kx6k-grey.bmp: [testng] [2025-01-09 01:23:18,805] [pool-1-thread-4] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2025-01-09 01:23:18,923] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] [2025-01-09 01:23:18,997] [pool-1-thread-3] Initializing /data/brian/images/raw_a.bmp: [testng] [2025-01-09 01:23:19,080] [pool-1-thread-10] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2025-01-09 01:23:19,322] [pool-1-thread-12] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [2025-01-09 01:23:19,421] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] [2025-01-09 01:23:19,617] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2025-01-09 01:23:19,844] [pool-1-thread-8] Initializing /data/frank/cell_mask_error.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS