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Started by upstream project "BIOFORMATS-test-repo" build number 313 originally caused by: Started by upstream project "Trigger" build number 335 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins128400847341122651.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49699_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:34:22,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:34:22,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 05:34:22,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:34:22,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:34:22,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:34:22,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:34:22,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:34:22,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:34:22,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:34:22,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:34:22,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:34:22,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:34:22,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:34:22,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:34:22,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:34:22,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:34:22,759 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:34:22,759 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:34:22,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:34:22,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:34:22,760 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 05:34:22,761 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 05:34:22,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-09 05:34:22,769] [main] java.version = 21 [testng] 05:34:22,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:34:22,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:34:22,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-09_05-34-22.log] [testng] 05:34:22,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-09 05:34:22,814] [main] testng.directory = /data [testng] [2025-01-09 05:34:22,814] [main] testng.configDirectory = /config [testng] [2025-01-09 05:34:22,822] [main] testng.multiplier = 1.0 [testng] [2025-01-09 05:34:22,823] [main] testng.in-memory = false [testng] [2025-01-09 05:34:22,823] [main] testng.allow-missing = false [testng] [2025-01-09 05:34:22,823] [main] user.language = en [testng] [2025-01-09 05:34:22,823] [main] user.country = ${user.country} [testng] [2025-01-09 05:34:22,823] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-09 05:34:45,991] [main] ---------------------------------------- [testng] [2025-01-09 05:34:45,991] [main] Total files: 31 [testng] [2025-01-09 05:34:45,992] [main] Scan time: 23.168 s (747 ms/file) [testng] [2025-01-09 05:34:45,992] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-09 05:35:09,521] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 05:35:09,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:35:09,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:09,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-09_05-35-09.log] [testng] 05:35:09,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191f9041 - End of configuration. [testng] [2025-01-09 05:35:10,377] [pool-1-thread-12] Initializing /data/david/cy5-tph.jp2: [testng] 05:35:10,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:35:10,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:10,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-09_05-35-10.log] [testng] 05:35:10,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63c356e - End of configuration. [testng] [2025-01-09 05:35:11,160] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jp2: [testng] 05:35:11,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:35:11,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:11,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-09_05-35-11.log] [testng] 05:35:11,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3768f748 - End of configuration. [testng] [2025-01-09 05:35:11,887] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 05:35:11,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:35:11,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:11,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-09_05-35-11.log] [testng] 05:35:11,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b44826a - End of configuration. [testng] [2025-01-09 05:35:12,424] [pool-1-thread-9] Initializing /data/venu/Multichannel 3a.jpg: [testng] 05:35:12,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:35:12,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:12,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-09_05-35-12.log] [testng] 05:35:12,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@212f53c5 - End of configuration. [testng] [2025-01-09 05:35:12,579] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 05:35:12,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:35:12,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:12,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-09_05-35-12.log] [testng] 05:35:12,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@379eb37a - End of configuration. [testng] [2025-01-09 05:35:13,123] [pool-1-thread-7] Initializing /data/vikram/Captured 4.jp2: [testng] 05:35:13,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:35:13,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:13,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-09_05-35-13.log] [testng] 05:35:13,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e08c1f - End of configuration. [testng] [2025-01-09 05:35:13,929] [pool-1-thread-6] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 05:35:13,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:35:13,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:13,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-09_05-35-13.log] [testng] 05:35:13,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ded394 - End of configuration. [testng] [2025-01-09 05:35:15,438] [pool-1-thread-5] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 05:35:15,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:35:15,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:15,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-09_05-35-15.log] [testng] 05:35:15,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49b1a7aa - End of configuration. [testng] [2025-01-09 05:35:16,128] [pool-1-thread-4] Initializing /data/david/C1R1_FOS.jp2: [testng] 05:35:16,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:35:16,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:16,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-09_05-35-16.log] [testng] 05:35:16,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40e95823 - End of configuration. [testng] [2025-01-09 05:35:16,726] [pool-1-thread-3] Initializing /data/kraig/head.jp2: [testng] 05:35:16,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:35:16,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:16,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-09_05-35-16.log] [testng] 05:35:16,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386d7a6e - End of configuration. [testng] [2025-01-09 05:35:17,476] [pool-1-thread-2] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 05:35:17,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:35:17,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:17,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-09_05-35-17.log] [testng] 05:35:17,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378b4b4c - End of configuration. [testng] [2025-01-09 05:35:22,987] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-01-09 05:35:25,673] [pool-1-thread-11] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-01-09 05:35:26,597] [pool-1-thread-3] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-01-09 05:35:27,423] [pool-1-thread-7] Initializing /data/vikram/Captured 1.jp2: [testng] [2025-01-09 05:35:29,538] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-01-09 05:35:30,221] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-01-09 05:35:31,664] [pool-1-thread-10] Initializing /data/david/multichannel-2d test.jp2: [testng] [2025-01-09 05:35:34,441] [pool-1-thread-7] Initializing /data/vikram/Captured 3.jp2: [testng] [2025-01-09 05:35:35,046] [pool-1-thread-11] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-01-09 05:35:35,901] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-01-09 05:35:36,606] [pool-1-thread-9] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-01-09 05:35:39,631] [pool-1-thread-6] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-01-09 05:35:41,263] [pool-1-thread-7] Initializing /data/frans/flower.jp2: [testng] [2025-01-09 05:35:41,899] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-01-09 05:35:44,423] [pool-1-thread-3] Initializing /data/david/000000_000001.jpx: [testng] [2025-01-09 05:35:47,379] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-01-09 05:35:48,466] [pool-1-thread-11] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2025-01-09 05:35:49,675] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 38 seconds Finished: SUCCESS