Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 314
originally caused by:
 Started by upstream project "Trigger" build number 336
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins14408947055492065765.sh
+ '[' slidebook-tiff = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_49767_merge_ci -v /uod/idr/repos/curated/slidebook-tiff:/data -v /uod/idr-scratch/merge-ci/curated/slidebook-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:05:07,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:05:07,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:05:07,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:05:07,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:05:07,356 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:05:07,357 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:05:07,357 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:05:07,357 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:05:07,357 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration.
   [testng] 02:05:07,358 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point
   [testng] 02:05:07,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 472 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-10 02:05:07,369] [main] java.version = 1.8.0_342
   [testng] 02:05:07,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:05:07,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:07,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-10_02-05-07.log]
   [testng] 02:05:07,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2025-01-10 02:05:07,424] [main] testng.directory = /data
   [testng] [2025-01-10 02:05:07,424] [main] testng.configDirectory = /config
   [testng] [2025-01-10 02:05:07,437] [main] testng.multiplier = 1.0
   [testng] [2025-01-10 02:05:07,437] [main] testng.in-memory = false
   [testng] [2025-01-10 02:05:07,438] [main] testng.allow-missing = false
   [testng] [2025-01-10 02:05:07,438] [main] user.language = en
   [testng] [2025-01-10 02:05:07,438] [main] user.country = ${user.country}
   [testng] [2025-01-10 02:05:07,438] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2025-01-10 02:05:07,992] [main] ----------------------------------------
   [testng] [2025-01-10 02:05:07,992] [main] Total files: 4
   [testng] [2025-01-10 02:05:07,992] [main] Scan time: 0.554 s (138 ms/file)
   [testng] [2025-01-10 02:05:07,992] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 2 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-10 02:05:17,997] [pool-1-thread-1] Initializing /data/jcb/GFP-MyoVI SIfull_NPYcherry_Nic03/Capture 1-01.tiff: 
   [testng] 02:05:17,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:05:17,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:17,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-10_02-05-17.log]
   [testng] 02:05:17,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc05932 - End of configuration.
   [testng] [2025-01-10 02:05:19,955] [pool-1-thread-2] Initializing /data/jcb/GFP-MyoVI NIfull_NPYcherry_Nic01/Capture 1-01.tiff: 
   [testng] 02:05:19,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:05:19,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:19,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-10_02-05-19.log]
   [testng] 02:05:19,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c5c1 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 106, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 39 seconds
Finished: SUCCESS