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Started by upstream project "BIOFORMATS-test-repo" build number 314 originally caused by: Started by upstream project "Trigger" build number 336 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins8227828400855246774.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49864_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:03:44,853 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:03:44,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 05:03:44,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:03:44,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:03:44,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:03:44,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:03:44,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:03:44,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:03:44,857 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:03:44,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:03:44,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:03:44,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:03:45,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:03:45,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:03:45,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:03:45,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:03:45,103 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:03:45,103 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:03:45,103 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:03:45,104 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:03:45,104 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 05:03:45,105 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 05:03:45,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 248 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-10 05:03:45,114] [main] java.version = 1.8.0_342 [testng] 05:03:45,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:03:45,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:45,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-10_05-03-45.log] [testng] 05:03:45,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2025-01-10 05:03:45,163] [main] testng.directory = /data [testng] [2025-01-10 05:03:45,164] [main] testng.configDirectory = /config [testng] [2025-01-10 05:03:45,175] [main] testng.multiplier = 1.0 [testng] [2025-01-10 05:03:45,175] [main] testng.in-memory = false [testng] [2025-01-10 05:03:45,175] [main] testng.allow-missing = false [testng] [2025-01-10 05:03:45,175] [main] user.language = en [testng] [2025-01-10 05:03:45,175] [main] user.country = ${user.country} [testng] [2025-01-10 05:03:45,175] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-01-10 05:04:07,831] [main] ---------------------------------------- [testng] [2025-01-10 05:04:07,831] [main] Total files: 31 [testng] [2025-01-10 05:04:07,831] [main] Scan time: 22.655 s (730 ms/file) [testng] [2025-01-10 05:04:07,831] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-10 05:04:37,805] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: [testng] 05:04:37,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:04:37,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:37,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-10_05-04-37.log] [testng] 05:04:37,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6da5904d - End of configuration. [testng] [2025-01-10 05:04:37,999] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jbig: [testng] 05:04:37,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:04:38,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:38,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-10_05-04-38.log] [testng] 05:04:38,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@695d884 - End of configuration. [testng] [2025-01-10 05:04:39,812] [pool-1-thread-11] Initializing /data/vikram/Captured 3.jp2: [testng] 05:04:39,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:04:39,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:39,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-10_05-04-39.log] [testng] 05:04:39,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77a6eac7 - End of configuration. [testng] [2025-01-10 05:04:40,530] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] 05:04:40,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:04:40,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:40,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-10_05-04-40.log] [testng] 05:04:40,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a8d52a - End of configuration. [testng] [2025-01-10 05:04:41,298] [pool-1-thread-9] Initializing /data/big-images/8kx8k.jpf: [testng] 05:04:41,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:04:41,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:41,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-10_05-04-41.log] [testng] 05:04:41,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cdcdcfa - End of configuration. [testng] [2025-01-10 05:04:42,068] [pool-1-thread-8] Initializing /data/vikram/Captured 1.jp2: [testng] 05:04:42,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:04:42,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:42,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-10_05-04-42.log] [testng] 05:04:42,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@268ba223 - End of configuration. [testng] [2025-01-10 05:04:43,098] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2: [testng] 05:04:43,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:04:43,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:43,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-10_05-04-43.log] [testng] 05:04:43,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bc70a68 - End of configuration. [testng] [2025-01-10 05:04:43,764] [pool-1-thread-6] Initializing /data/david/multichannel-2d test.jp2: [testng] 05:04:43,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:04:43,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:43,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-10_05-04-43.log] [testng] 05:04:43,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fc98436 - End of configuration. [testng] [2025-01-10 05:04:44,443] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 05:04:44,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:04:44,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:44,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-10_05-04-44.log] [testng] 05:04:44,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36b30169 - End of configuration. [testng] [2025-01-10 05:04:46,505] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 05:04:46,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:04:46,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:46,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-10_05-04-46.log] [testng] 05:04:46,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38b86200 - End of configuration. [testng] [2025-01-10 05:04:47,148] [pool-1-thread-3] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 05:04:47,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:04:47,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:47,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-10_05-04-47.log] [testng] 05:04:47,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@727addd - End of configuration. [testng] [2025-01-10 05:04:47,969] [pool-1-thread-2] Initializing /data/vikram/Captured 5.jp2: [testng] 05:04:47,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:04:47,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:47,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-10_05-04-47.log] [testng] 05:04:47,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479265c0 - End of configuration. [testng] [2025-01-10 05:04:55,792] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-01-10 05:04:56,611] [pool-1-thread-7] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-01-10 05:04:57,781] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-01-10 05:04:58,691] [pool-1-thread-11] Initializing /data/david/C1R1_FOS.jp2: [testng] [2025-01-10 05:04:59,594] [pool-1-thread-2] Initializing /data/david/cy5-tph.jp2: [testng] [2025-01-10 05:05:02,029] [pool-1-thread-3] Initializing /data/kraig/head.jp2: [testng] [2025-01-10 05:05:02,917] [pool-1-thread-12] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-01-10 05:05:05,385] [pool-1-thread-5] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2025-01-10 05:05:06,366] [pool-1-thread-10] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-01-10 05:05:07,170] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2025-01-10 05:05:08,811] [pool-1-thread-8] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-01-10 05:05:12,442] [pool-1-thread-3] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2025-01-10 05:05:13,807] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2025-01-10 05:05:19,071] [pool-1-thread-12] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-01-10 05:05:22,856] [pool-1-thread-7] Initializing /data/david/000000_000001.jpx: [testng] [2025-01-10 05:05:26,886] [pool-1-thread-5] Initializing /data/frans/flower.jp2: [testng] [2025-01-10 05:05:27,537] [pool-1-thread-4] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-01-10 05:05:28,962] [pool-1-thread-12] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 40 seconds Finished: SUCCESS