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Started by upstream project "BIOFORMATS-test-repo" build number 37 originally caused by: Started by upstream project "Trigger" build number 42 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4005984233696674241.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5068_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:18:58,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:18:58,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:18:58,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:18:58,430 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:18:58,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:18:58,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:18:58,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:18:58,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:18:58,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:18:58,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:18:58,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:18:58,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:18:58,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:18:58,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:18:58,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:18:58,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:18:58,634 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:18:58,634 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:18:58,634 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:18:58,634 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:18:58,635 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:18:58,636 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:18:58,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-18 01:18:58,648] [main] java.version = 21 [testng] 01:18:58,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:18:58,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:58,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-18_01-18-58.log] [testng] 01:18:58,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-18 01:18:58,696] [main] testng.directory = /data [testng] [2024-04-18 01:18:58,696] [main] testng.configDirectory = /config [testng] [2024-04-18 01:18:58,705] [main] testng.multiplier = 1.0 [testng] [2024-04-18 01:18:58,705] [main] testng.in-memory = false [testng] [2024-04-18 01:18:58,705] [main] testng.allow-missing = false [testng] [2024-04-18 01:18:58,706] [main] user.language = en [testng] [2024-04-18 01:18:58,706] [main] user.country = ${user.country} [testng] [2024-04-18 01:18:58,706] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-18 01:19:13,019] [main] ---------------------------------------- [testng] [2024-04-18 01:19:13,020] [main] Total files: 4424 [testng] [2024-04-18 01:19:13,020] [main] Scan time: 14.313 s (3 ms/file) [testng] [2024-04-18 01:19:13,021] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-18 01:20:57,472] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] 01:20:57,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:57,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-18_01-20-57.log] [testng] 01:20:57,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5481394 - End of configuration. [testng] [2024-04-18 01:20:57,507] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] 01:20:57,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:57,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-18_01-20-57.log] [testng] 01:20:57,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e6b8c41 - End of configuration. [testng] [2024-04-18 01:20:57,541] [pool-1-thread-11] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] 01:20:57,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:57,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-18_01-20-57.log] [testng] 01:20:57,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35b0b89c - End of configuration. [testng] [2024-04-18 01:20:57,563] [pool-1-thread-10] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] 01:20:57,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:57,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-18_01-20-57.log] [testng] 01:20:57,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8b2490 - End of configuration. [testng] [2024-04-18 01:20:57,613] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] 01:20:57,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:57,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-18_01-20-57.log] [testng] 01:20:57,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e6acdcf - End of configuration. [testng] [2024-04-18 01:20:57,638] [pool-1-thread-8] Initializing /data/misc/mri.eps: [testng] 01:20:57,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:57,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-18_01-20-57.log] [testng] 01:20:57,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5419985e - End of configuration. [testng] [2024-04-18 01:20:57,653] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] 01:20:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-18_01-20-57.log] [testng] 01:20:57,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67515812 - End of configuration. [testng] [2024-04-18 01:20:57,680] [pool-1-thread-6] Initializing /data/josiah/cell-Z27.C1.tiff: [testng] 01:20:57,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:57,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-18_01-20-57.log] [testng] 01:20:57,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25073306 - End of configuration. [testng] [2024-04-18 01:20:57,727] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] 01:20:57,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:57,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-18_01-20-57.log] [testng] 01:20:57,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70fcb276 - End of configuration. [testng] [2024-04-18 01:20:57,752] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] 01:20:57,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:57,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-18_01-20-57.log] [testng] 01:20:57,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40745c15 - End of configuration. [testng] [2024-04-18 01:20:57,775] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z036.tif: [testng] 01:20:57,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:57,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-18_01-20-57.log] [testng] 01:20:57,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@743d3750 - End of configuration. [testng] [2024-04-18 01:20:57,800] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] 01:20:57,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:57,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-18_01-20-57.log] [testng] 01:20:57,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3330fb37 - End of configuration. [testng] [2024-04-18 01:20:59,483] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2024-04-18 01:20:59,526] [pool-1-thread-11] Initializing /data/curtis/map/jumps-over: [testng] [2024-04-18 01:20:59,543] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] [2024-04-18 01:20:59,562] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-04-18 01:20:59,582] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-04-18 01:20:59,600] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-04-18 01:20:59,651] [pool-1-thread-7] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-04-18 01:20:59,672] [pool-1-thread-3] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-04-18 01:20:59,698] [pool-1-thread-5] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-04-18 01:21:00,756] [pool-1-thread-8] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-04-18 01:21:00,812] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0253.TIF: [testng] [2024-04-18 01:21:01,313] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-04-18 01:21:01,385] [pool-1-thread-12] Initializing /data/damian/06m.tiff: [testng] [2024-04-18 01:21:01,435] [pool-1-thread-7] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-04-18 01:21:01,599] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-04-18 01:21:01,641] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-04-18 01:21:01,821] [pool-1-thread-3] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-04-18 01:21:01,866] [pool-1-thread-6] Initializing /data/damian/21m.tiff: [testng] [2024-04-18 01:21:01,947] [pool-1-thread-4] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-04-18 01:21:01,991] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-04-18 01:21:02,012] [pool-1-thread-9] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-04-18 01:21:02,123] [pool-1-thread-12] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-04-18 01:21:02,579] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0202.TIF: [testng] [2024-04-18 01:21:02,644] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-04-18 01:21:02,758] [pool-1-thread-6] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-04-18 01:21:02,846] [pool-1-thread-3] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-04-18 01:21:02,927] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-04-18 01:21:03,168] [pool-1-thread-2] Initializing /data/damian/33m.tiff: [testng] [2024-04-18 01:21:03,685] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2024-04-18 01:21:03,731] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-04-18 01:21:03,827] [pool-1-thread-2] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] [2024-04-18 01:21:03,951] [pool-1-thread-1] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-04-18 01:21:04,049] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-04-18 01:21:04,089] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-04-18 01:21:04,145] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-04-18 01:21:04,289] [pool-1-thread-3] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-04-18 01:21:04,554] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-04-18 01:21:04,572] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-04-18 01:21:04,730] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] [2024-04-18 01:21:04,919] [pool-1-thread-11] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-04-18 01:21:04,992] [pool-1-thread-7] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-04-18 01:21:05,035] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-04-18 01:21:05,208] [pool-1-thread-10] Initializing /data/julien/baldindq-OVA.TIF: [testng] [2024-04-18 01:21:05,306] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z025.tif: [testng] [2024-04-18 01:21:05,354] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0227.TIF: [testng] [2024-04-18 01:21:05,409] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-04-18 01:21:05,685] [pool-1-thread-11] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-04-18 01:21:05,765] 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[testng] [2024-04-18 01:21:24,098] [pool-1-thread-12] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-04-18 01:21:24,159] [pool-1-thread-1] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-04-18 01:21:24,270] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-04-18 01:21:24,401] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-04-18 01:21:24,636] [pool-1-thread-10] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-04-18 01:21:24,690] [pool-1-thread-11] Initializing /data/josiah/cell-Z19.C1.tiff: [testng] [2024-04-18 01:21:24,853] [pool-1-thread-1] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-04-18 01:21:24,881] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-04-18 01:21:25,077] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z013.tif: [testng] [2024-04-18 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01:22:14,275] [pool-1-thread-5] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-04-18 01:22:14,325] [pool-1-thread-3] Initializing /data/tom-kazimiers/test_exiftool2.tiff: [testng] [2024-04-18 01:22:14,445] [pool-1-thread-9] Initializing /data/wayne/Rockies-8bit-indexed.tif: [testng] [2024-04-18 01:22:14,472] [pool-1-thread-10] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-04-18 01:22:14,497] [pool-1-thread-12] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-04-18 01:22:14,561] [pool-1-thread-11] Initializing /data/ascb/CYT-57_HowellClatharinDetails_4800.tif: [testng] [2024-04-18 01:22:14,656] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z030.tif: [testng] [2024-04-18 01:22:14,950] [pool-1-thread-5] Initializing /data/tom-kazimiers/test_exiftool2_resave.tiff: [testng] [2024-04-18 01:22:14,990] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z007.tif: [testng] 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01:22:38,424] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z008.tif: [testng] [2024-04-18 01:22:38,530] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-04-18 01:22:38,953] [pool-1-thread-8] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-04-18 01:22:40,379] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-04-18 01:22:40,420] [pool-1-thread-9] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2024-04-18 01:22:40,722] [pool-1-thread-6] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2024-04-18 01:22:40,827] [pool-1-thread-3] Initializing /data/michael/MFISH.tiff: [testng] [2024-04-18 01:22:40,881] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-04-18 01:22:41,049] [pool-1-thread-10] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-04-18 01:22:41,288] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z063.tif: [testng] [2024-04-18 01:22:41,483] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-04-18 01:22:41,625] [pool-1-thread-2] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-04-18 01:22:41,676] [pool-1-thread-1] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-04-18 01:22:41,732] [pool-1-thread-7] Initializing /data/josh/stack.tif: [testng] [2024-04-18 01:22:41,809] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] [2024-04-18 01:22:41,986] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-04-18 01:22:42,290] [pool-1-thread-3] Initializing /data/curtis/map/the-quick: [testng] [2024-04-18 01:22:42,324] [pool-1-thread-1] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-04-18 01:22:42,370] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z010.tif: [testng] [2024-04-18 01:22:42,585] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-04-18 01:22:42,688] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-04-18 01:22:42,834] [pool-1-thread-7] Initializing /data/lzw/DendriteForks.tif: [testng] [2024-04-18 01:22:42,959] [pool-1-thread-5] Initializing /data/qa-7589/CalGrid2.tif: [testng] [2024-04-18 01:22:43,050] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z037.tif: [testng] [2024-04-18 01:22:43,087] [pool-1-thread-2] Initializing /data/tamjid/Image_843.tif: [testng] [2024-04-18 01:22:43,122] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z016.tif: [testng] [2024-04-18 01:22:43,356] [pool-1-thread-6] Initializing /data/curtis/images24.tiff: [testng] [2024-04-18 01:22:43,520] [pool-1-thread-5] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-04-18 01:22:43,580] [pool-1-thread-1] Initializing 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01:22:45,265] [pool-1-thread-9] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-04-18 01:22:45,377] [pool-1-thread-4] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-04-18 01:22:45,433] [pool-1-thread-7] Initializing /data/curtis/test2.tiff: [testng] [2024-04-18 01:22:45,609] [pool-1-thread-1] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-04-18 01:22:45,743] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-04-18 01:22:45,798] [pool-1-thread-7] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-04-18 01:22:45,869] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-04-18 01:22:46,071] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-04-18 01:22:46,212] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-04-18 01:22:46,244] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-04-18 01:22:46,481] [pool-1-thread-4] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-04-18 01:22:46,567] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-04-18 01:22:46,601] [pool-1-thread-11] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-04-18 01:22:46,663] [pool-1-thread-9] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-04-18 01:22:46,789] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x48.tiff: [testng] [2024-04-18 01:22:46,941] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-04-18 01:22:46,992] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-04-18 01:22:47,110] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-04-18 01:22:47,141] [pool-1-thread-9] Initializing /data/martin/head.tif: [testng] [2024-04-18 01:22:47,385] [pool-1-thread-11] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-04-18 01:22:47,518] [pool-1-thread-1] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-04-18 01:22:47,917] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-64.tiff: [testng] [2024-04-18 01:22:48,004] [pool-1-thread-3] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-04-18 01:22:48,190] [pool-1-thread-9] Initializing /data/josiah/cell-Z3.C1.tiff: [testng] [2024-04-18 01:22:48,333] [pool-1-thread-1] Initializing /data/josiah/cell-Z32.C0.tiff: [testng] [2024-04-18 01:22:48,457] [pool-1-thread-3] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-04-18 01:22:48,504] [pool-1-thread-7] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-04-18 01:22:48,623] [pool-1-thread-9] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-04-18 01:22:49,790] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-04-18 01:22:49,855] [pool-1-thread-1] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-04-18 01:22:50,363] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-04-18 01:22:50,390] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z053.tif: [testng] [2024-04-18 01:22:50,665] [pool-1-thread-3] Initializing /data/wayne/m51-16bit.tif: [testng] [2024-04-18 01:22:50,697] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z012.tif: [testng] [2024-04-18 01:22:50,721] [pool-1-thread-10] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-04-18 01:22:50,838] [pool-1-thread-6] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-04-18 01:22:51,138] [pool-1-thread-1] Initializing /data/bene/3d-example-stack.tif: [testng] [2024-04-18 01:22:51,256] [pool-1-thread-10] Initializing /data/damian/12m.tiff: [testng] [2024-04-18 01:22:51,300] [pool-1-thread-3] Initializing /data/public/condensation/A6.pattern2.tif: [testng] [2024-04-18 01:22:51,512] [pool-1-thread-6] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] [2024-04-18 01:22:51,721] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-04-18 01:22:51,799] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0256.TIF: [testng] [2024-04-18 01:22:51,864] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-04-18 01:22:52,094] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-04-18 01:22:52,345] [pool-1-thread-6] Initializing /data/josiah/cell-Z9.C1.tiff: [testng] [2024-04-18 01:22:52,394] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-04-18 01:22:52,586] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-04-18 01:22:52,642] [pool-1-thread-7] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-04-18 01:22:52,767] [pool-1-thread-3] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-04-18 01:22:52,815] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-04-18 01:22:52,927] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] [2024-04-18 01:22:52,960] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-04-18 01:22:53,025] [pool-1-thread-5] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-04-18 01:22:53,550] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-04-18 01:22:53,695] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-04-18 01:22:53,817] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-04-18 01:22:53,847] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-04-18 01:22:53,871] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z005.tif: [testng] [2024-04-18 01:22:53,900] [pool-1-thread-1] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-04-18 01:22:54,313] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-04-18 01:22:54,400] [pool-1-thread-6] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-04-18 01:22:54,443] [pool-1-thread-3] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-04-18 01:22:54,490] [pool-1-thread-11] Initializing /data/big-images/4kx4k.tif: [testng] [2024-04-18 01:22:54,549] [pool-1-thread-1] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-04-18 01:22:54,670] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] [2024-04-18 01:22:54,693] [pool-1-thread-7] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-04-18 01:22:54,899] [pool-1-thread-6] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-04-18 01:22:55,051] [pool-1-thread-2] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-04-18 01:22:55,085] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-04-18 01:22:55,356] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-04-18 01:22:55,420] [pool-1-thread-7] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-04-18 01:22:55,550] [pool-1-thread-3] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-04-18 01:22:55,802] [pool-1-thread-2] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-04-18 01:22:56,211] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z012.tif: [testng] [2024-04-18 01:22:56,260] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z039.tif: [testng] [2024-04-18 01:22:56,456] [pool-1-thread-10] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-04-18 01:22:56,596] [pool-1-thread-2] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-04-18 01:22:56,644] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-04-18 01:22:56,742] [pool-1-thread-6] Initializing /data/misc/mri-old.mov: [testng] [2024-04-18 01:22:57,099] [pool-1-thread-7] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-04-18 01:22:57,171] [pool-1-thread-6] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-04-18 01:22:57,217] [pool-1-thread-10] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-04-18 01:22:57,970] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-04-18 01:22:58,031] [pool-1-thread-10] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-04-18 01:22:58,137] [pool-1-thread-7] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-04-18 01:22:58,318] [pool-1-thread-3] Initializing /data/misc/wtembryo.tiff: [testng] [2024-04-18 01:22:58,402] [pool-1-thread-6] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-04-18 01:22:58,546] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-04-18 01:22:58,748] [pool-1-thread-6] Initializing /data/jcb/SuppFig5D.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 26 seconds Finished: SUCCESS