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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17834096173899098974.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5221_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:05:16,426 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:05:16,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:05:16,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:05:16,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:05:16,429 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:05:16,429 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:05:16,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:05:16,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:05:16,430 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:05:16,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:05:16,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:05:16,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:05:16,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:05:16,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:05:16,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:05:16,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:05:16,685 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:05:16,685 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:05:16,685 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:05:16,685 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:05:16,685 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:05:16,686 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:05:16,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:05:16,696] [main] java.version = 1.8.0_342 [testng] 09:05:16,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:05:16,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:16,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-05-16.log] [testng] 09:05:16,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:05:16,745] [main] testng.directory = /data [testng] [2024-04-19 09:05:16,745] [main] testng.configDirectory = /config [testng] [2024-04-19 09:05:16,756] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:05:16,756] [main] testng.in-memory = false [testng] [2024-04-19 09:05:16,756] [main] testng.allow-missing = false [testng] [2024-04-19 09:05:16,757] [main] user.language = en [testng] [2024-04-19 09:05:16,757] [main] user.country = ${user.country} [testng] [2024-04-19 09:05:16,757] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:05:17,268] [main] ---------------------------------------- [testng] [2024-04-19 09:05:17,268] [main] Total files: 36 [testng] [2024-04-19 09:05:17,268] [main] Scan time: 0.511 s (14 ms/file) [testng] [2024-04-19 09:05:17,268] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:05:19,015] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 09:05:19,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:05:19,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-05-19.log] [testng] 09:05:19,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a7e3a7a - End of configuration. [testng] [2024-04-19 09:05:19,054] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 09:05:19,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:05:19,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-05-19.log] [testng] 09:05:19,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38378b87 - End of configuration. [testng] [2024-04-19 09:05:19,059] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 09:05:19,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:05:19,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-05-19.log] [testng] 09:05:19,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@597cc3e7 - End of configuration. [testng] [2024-04-19 09:05:19,066] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 09:05:19,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:05:19,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-05-19.log] [testng] 09:05:19,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12676c0d - End of configuration. [testng] [2024-04-19 09:05:19,070] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 09:05:19,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:05:19,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-05-19.log] [testng] 09:05:19,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5bbb20 - End of configuration. [testng] [2024-04-19 09:05:19,075] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 09:05:19,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:05:19,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-05-19.log] [testng] 09:05:19,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1098245 - End of configuration. [testng] [2024-04-19 09:05:19,079] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 09:05:19,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:05:19,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-05-19.log] [testng] 09:05:19,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d06228 - End of configuration. [testng] [2024-04-19 09:05:19,083] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 09:05:19,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:05:19,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-05-19.log] [testng] 09:05:19,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b9f091 - End of configuration. [testng] [2024-04-19 09:05:19,088] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 09:05:19,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:05:19,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-05-19.log] [testng] 09:05:19,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@264aa803 - End of configuration. [testng] [2024-04-19 09:05:19,092] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 09:05:19,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:05:19,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-05-19.log] [testng] 09:05:19,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e77647 - End of configuration. [testng] [2024-04-19 09:05:19,096] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 09:05:19,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:05:19,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-05-19.log] [testng] 09:05:19,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c2d503 - End of configuration. [testng] [2024-04-19 09:05:19,100] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 09:05:19,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:05:19,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:19,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-05-19.log] [testng] 09:05:19,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcc1e0 - End of configuration. [testng] [2024-04-19 09:05:20,809] [pool-1-thread-1] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-04-19 09:05:20,812] [pool-1-thread-6] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-04-19 09:05:20,815] [pool-1-thread-8] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-04-19 09:05:20,818] [pool-1-thread-9] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-04-19 09:05:20,821] [pool-1-thread-10] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-04-19 09:05:20,825] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-04-19 09:05:20,828] [pool-1-thread-2] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-04-19 09:05:20,833] [pool-1-thread-3] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-04-19 09:05:20,836] [pool-1-thread-12] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-04-19 09:05:20,838] [pool-1-thread-4] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-04-19 09:05:20,841] [pool-1-thread-5] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-04-19 09:05:20,846] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-04-19 09:05:21,097] [pool-1-thread-12] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-04-19 09:05:21,100] [pool-1-thread-8] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-04-19 09:05:21,137] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-04-19 09:05:21,139] [pool-1-thread-4] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-04-19 09:05:21,142] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-04-19 09:05:21,149] [pool-1-thread-6] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-04-19 09:05:21,162] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-04-19 09:05:21,172] [pool-1-thread-3] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-04-19 09:05:21,253] [pool-1-thread-8] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-04-19 09:05:21,257] [pool-1-thread-12] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-04-19 09:05:21,300] [pool-1-thread-4] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS