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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins6484766921790883905.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5231_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:05:48,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:05:48,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:05:48,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:05:48,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:05:48,566 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:05:48,567 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:05:48,567 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:05:48,568 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:05:48,568 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 09:05:48,570 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 09:05:48,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 469 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:05:48,584] [main] java.version = 1.8.0_342 [testng] 09:05:48,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:05:48,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:48,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-05-48.log] [testng] 09:05:48,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:05:48,647] [main] testng.directory = /data [testng] [2024-04-19 09:05:48,647] [main] testng.configDirectory = /config [testng] [2024-04-19 09:05:48,661] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:05:48,662] [main] testng.in-memory = false [testng] [2024-04-19 09:05:48,662] [main] testng.allow-missing = false [testng] [2024-04-19 09:05:48,662] [main] user.language = en [testng] [2024-04-19 09:05:48,662] [main] user.country = ${user.country} [testng] [2024-04-19 09:05:48,662] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:06:08,001] [main] ---------------------------------------- [testng] [2024-04-19 09:06:08,001] [main] Total files: 283 [testng] [2024-04-19 09:06:08,002] [main] Scan time: 19.339 s (68 ms/file) [testng] [2024-04-19 09:06:08,002] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:15:01,286] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 09:15:01,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:15:01,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:01,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-15-01.log] [testng] 09:15:01,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@304b1a5c - End of configuration. [testng] [2024-04-19 09:15:01,383] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 09:15:01,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:15:01,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:01,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-15-01.log] [testng] 09:15:01,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40ca8b52 - End of configuration. [testng] [2024-04-19 09:15:01,470] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 09:15:01,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:15:01,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:01,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-15-01.log] [testng] 09:15:01,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb06040 - End of configuration. [testng] [2024-04-19 09:15:01,554] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 09:15:01,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:15:01,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:01,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-15-01.log] [testng] 09:15:01,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b18b59 - End of configuration. [testng] [2024-04-19 09:15:02,342] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 09:15:02,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:15:02,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:02,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-15-02.log] [testng] 09:15:02,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f15ea9 - End of configuration. [testng] [2024-04-19 09:15:02,417] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 09:15:02,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:15:02,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:02,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-15-02.log] [testng] 09:15:02,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f1ff0c - End of configuration. [testng] [2024-04-19 09:15:02,503] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 09:15:02,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:15:02,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:02,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-15-02.log] [testng] 09:15:02,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b51327 - End of configuration. [testng] [2024-04-19 09:15:02,615] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 09:15:02,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:15:02,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:02,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-15-02.log] [testng] 09:15:02,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20cac0a3 - End of configuration. [testng] [2024-04-19 09:15:02,755] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 09:15:02,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:15:02,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:02,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-15-02.log] [testng] 09:15:02,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bd8cb86 - End of configuration. [testng] [2024-04-19 09:15:03,175] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 09:15:03,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:15:03,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:03,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-15-03.log] [testng] 09:15:03,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f9c1d93 - End of configuration. [testng] [2024-04-19 09:15:03,312] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 09:15:03,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:15:03,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:03,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-15-03.log] [testng] 09:15:03,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565195ae - End of configuration. [testng] [2024-04-19 09:15:03,345] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 09:15:03,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:15:03,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:03,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-15-03.log] [testng] 09:15:03,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f0d7fa0 - End of configuration. [testng] [2024-04-19 09:15:06,734] [pool-1-thread-1] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-04-19 09:15:07,522] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-04-19 09:15:07,581] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi: [testng] [2024-04-19 09:15:07,619] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-04-19 09:15:08,135] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-04-19 09:15:08,257] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-04-19 09:15:08,917] [pool-1-thread-9] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-04-19 09:15:09,064] [pool-1-thread-2] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-04-19 09:15:09,110] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-04-19 09:15:09,359] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-04-19 09:15:10,000] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-04-19 09:15:10,453] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-04-19 09:15:14,216] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-04-19 09:15:14,317] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-04-19 09:15:14,361] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-04-19 09:15:14,655] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-04-19 09:15:14,857] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-04-19 09:15:15,520] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-04-19 09:15:15,897] [pool-1-thread-5] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-04-19 09:15:16,131] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-04-19 09:15:16,205] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-04-19 09:15:16,385] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-04-19 09:15:16,542] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-04-19 09:15:16,912] [pool-1-thread-9] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-04-19 09:15:17,594] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-04-19 09:15:18,113] [pool-1-thread-3] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-04-19 09:15:45,200] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-04-19 09:15:45,259] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-04-19 09:15:45,338] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-04-19 09:15:47,154] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-04-19 09:15:47,715] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-04-19 09:15:48,129] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-04-19 09:15:48,246] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-04-19 09:15:48,357] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-04-19 09:15:48,528] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-04-19 09:15:48,879] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-04-19 09:15:49,396] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-04-19 09:15:49,680] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-04-19 09:15:51,262] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-04-19 09:15:51,331] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-04-19 09:15:51,492] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-04-19 09:15:52,276] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-04-19 09:15:52,385] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-04-19 09:15:54,124] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-04-19 09:15:54,907] [pool-1-thread-11] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-04-19 09:15:55,024] [pool-1-thread-7] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-04-19 09:15:55,412] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-04-19 09:15:55,646] [pool-1-thread-8] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-04-19 09:15:55,715] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-04-19 09:15:56,281] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-04-19 09:15:56,896] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-04-19 09:15:57,037] [pool-1-thread-8] Initializing /data/qa-17919/f10187.oir: [testng] [2024-04-19 09:16:31,909] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-04-19 09:16:32,309] [pool-1-thread-10] Initializing /data/qa-17270/image1.oir: [testng] [2024-04-19 09:16:32,527] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-04-19 09:16:32,699] [pool-1-thread-11] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-04-19 09:16:32,918] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-04-19 09:16:33,333] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-04-19 09:16:33,602] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-04-19 09:16:34,058] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-04-19 09:16:37,227] [pool-1-thread-9] 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[2024-04-19 09:19:30,521] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-04-19 09:19:31,760] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-04-19 09:19:57,865] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-04-19 09:20:08,731] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-04-19 09:20:13,537] [pool-1-thread-6] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-04-19 09:20:14,717] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-04-19 09:20:15,847] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-04-19 09:20:16,159] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-04-19 09:20:17,554] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-04-19 09:20:18,023] [pool-1-thread-6] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-04-19 09:20:19,099] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-04-19 09:20:19,788] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-04-19 09:20:51,997] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-04-19 09:20:53,067] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-04-19 09:20:53,754] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-04-19 09:20:54,207] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-04-19 09:20:54,869] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-04-19 09:20:55,732] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-04-19 09:20:56,766] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-04-19 09:20:58,060] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-04-19 09:20:59,711] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-04-19 09:21:00,221] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-04-19 09:21:00,908] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-04-19 09:21:01,362] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-04-19 09:21:04,419] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-04-19 09:21:04,961] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-04-19 09:21:06,263] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-04-19 09:21:06,319] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-04-19 09:21:07,552] [pool-1-thread-2] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-04-19 09:21:16,471] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-04-19 09:21:17,821] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-04-19 09:21:20,171] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-04-19 09:21:20,396] [pool-1-thread-6] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-04-19 09:24:49,576] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-04-19 09:25:13,274] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-04-19 09:25:14,100] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-04-19 09:25:15,423] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-04-19 09:25:17,362] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-04-19 09:25:18,803] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-04-19 09:25:20,331] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-04-19 09:25:21,324] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-04-19 09:25:23,284] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-04-19 09:25:25,063] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-04-19 09:25:48,988] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-04-19 09:25:50,757] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-04-19 09:25:52,340] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-04-19 09:25:53,982] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-04-19 09:25:56,043] [pool-1-thread-2] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-04-19 09:26:05,290] [pool-1-thread-9] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-04-19 09:26:06,921] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-04-19 09:26:08,369] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-04-19 09:26:12,899] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-04-19 09:26:13,285] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-04-19 09:26:14,468] [pool-1-thread-11] Initializing /data/qa-16871/Clipboard.tif: [testng] 10:15:54,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:15:54,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:15:54,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_10-15-54.log] [testng] 10:15:54,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 70 minutes 12 seconds Finished: SUCCESS