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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11779384543739566483.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5258_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:12:21,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:12:21,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:12:21,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:12:21,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:12:21,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:12:21,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:12:21,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:12:21,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:12:21,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:12:21,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:12:21,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:12:21,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:12:21,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:12:21,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:12:21,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:12:21,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:12:21,946 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:12:21,947 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:12:21,947 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:12:21,947 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:12:21,947 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:12:21,948 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:12:21,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:12:21,958] [main] java.version = 1.8.0_342 [testng] 09:12:21,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:12:21,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:22,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-12-21.log] [testng] 09:12:22,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:12:22,011] [main] testng.directory = /data [testng] [2024-04-19 09:12:22,011] [main] testng.configDirectory = /config [testng] [2024-04-19 09:12:22,024] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:12:22,024] [main] testng.in-memory = false [testng] [2024-04-19 09:12:22,024] [main] testng.allow-missing = false [testng] [2024-04-19 09:12:22,024] [main] user.language = en [testng] [2024-04-19 09:12:22,024] [main] user.country = ${user.country} [testng] [2024-04-19 09:12:22,024] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:12:22,435] [main] ---------------------------------------- [testng] [2024-04-19 09:12:22,435] [main] Total files: 21 [testng] [2024-04-19 09:12:22,435] [main] Scan time: 0.411 s (19 ms/file) [testng] [2024-04-19 09:12:22,435] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:12:23,337] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 09:12:23,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:12:23,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-12-23.log] [testng] 09:12:23,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a82f6a - End of configuration. [testng] [2024-04-19 09:12:23,357] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 09:12:23,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:12:23,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-12-23.log] [testng] 09:12:23,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15903fda - End of configuration. [testng] [2024-04-19 09:12:23,404] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 09:12:23,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:12:23,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-12-23.log] [testng] 09:12:23,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a4b927 - End of configuration. [testng] [2024-04-19 09:12:23,415] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 09:12:23,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:12:23,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-12-23.log] [testng] 09:12:23,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274a5a38 - End of configuration. [testng] [2024-04-19 09:12:23,425] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 09:12:23,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:12:23,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-12-23.log] [testng] 09:12:23,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c634d8 - End of configuration. [testng] [2024-04-19 09:12:23,439] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 09:12:23,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:12:23,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-12-23.log] [testng] 09:12:23,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42148bda - End of configuration. [testng] [2024-04-19 09:12:23,456] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 09:12:23,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:12:23,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-12-23.log] [testng] 09:12:23,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44fdbe23 - End of configuration. [testng] [2024-04-19 09:12:23,468] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 09:12:23,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:12:23,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-12-23.log] [testng] 09:12:23,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b3bd04 - End of configuration. [testng] [2024-04-19 09:12:23,481] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 09:12:23,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:12:23,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-12-23.log] [testng] 09:12:23,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d95d70 - End of configuration. [testng] [2024-04-19 09:12:23,496] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 09:12:23,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:12:23,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-12-23.log] [testng] 09:12:23,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3238418f - End of configuration. [testng] [2024-04-19 09:12:23,510] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 09:12:23,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:12:23,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-12-23.log] [testng] 09:12:23,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@452d0087 - End of configuration. [testng] [2024-04-19 09:12:23,524] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 09:12:23,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:12:23,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:23,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-12-23.log] [testng] 09:12:23,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bf3420e - End of configuration. [testng] [2024-04-19 09:12:25,528] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA: [testng] [2024-04-19 09:12:25,536] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] [2024-04-19 09:12:25,548] [pool-1-thread-9] Initializing /data/samples/CCM8.TGA: [testng] [2024-04-19 09:12:25,554] [pool-1-thread-6] Initializing /data/samples/XING_T16.TGA: [testng] [2024-04-19 09:12:25,562] [pool-1-thread-10] Initializing /data/samples/UTC32.TGA: [testng] [2024-04-19 09:12:25,571] [pool-1-thread-1] Initializing /data/samples/XING_B16.TGA: [testng] [2024-04-19 09:12:25,578] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] [2024-04-19 09:12:25,585] [pool-1-thread-3] Initializing /data/samples/UTC24.TGA: [testng] [2024-04-19 09:12:25,593] [pool-1-thread-11] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 seconds Finished: SUCCESS