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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1769108156435760903.sh + '[' metaxpress = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5260_merge_ci -v /uod/idr/repos/curated/metaxpress:/data -v /uod/idr-scratch/merge-ci/curated/metaxpress:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:12:40,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:12:40,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:12:40,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:12:40,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:12:40,968 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:12:40,968 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:12:40,968 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:12:40,968 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:12:40,969 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 09:12:40,969 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 09:12:40,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 412 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:12:40,980] [main] java.version = 1.8.0_342 [testng] 09:12:40,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:12:40,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:12:41,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-12-41.log] [testng] 09:12:41,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:12:41,039] [main] testng.directory = /data [testng] [2024-04-19 09:12:41,039] [main] testng.configDirectory = /config [testng] [2024-04-19 09:12:41,054] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:12:41,055] [main] testng.in-memory = false [testng] [2024-04-19 09:12:41,055] [main] testng.allow-missing = false [testng] [2024-04-19 09:12:41,055] [main] user.language = en [testng] [2024-04-19 09:12:41,055] [main] user.country = ${user.country} [testng] [2024-04-19 09:12:41,055] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:19:41,253] [main] ---------------------------------------- [testng] [2024-04-19 09:19:41,254] [main] Total files: 1231 [testng] [2024-04-19 09:19:41,254] [main] Scan time: 420.197 s (341 ms/file) [testng] [2024-04-19 09:19:41,254] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 10 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:24:18,212] [pool-1-thread-1] Initializing /data/public/idr0006/plate 11001_Plate_136/TimePoint_1/plate 11001.HTD: [testng] 09:24:18,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:24:18,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:24:18,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-24-18.log] [testng] 09:24:18,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@df0daec - End of configuration. [testng] [2024-04-19 09:24:48,291] [pool-1-thread-10] Initializing /data/public/idr0081/BSF018292-1A/BSF018292-1A.HTD: [testng] 09:24:48,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:24:48,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:24:48,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-24-48.log] [testng] 09:24:48,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1828b78b - End of configuration. [testng] [2024-04-19 09:24:50,115] [pool-1-thread-9] Initializing /data/public/idr0008/Plate10_Actinome1/Act1_Plate10-SP-A8.HTD: [testng] 09:24:50,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:24:50,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:24:50,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-24-50.log] [testng] 09:24:50,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35a908be - End of configuration. [testng] [2024-04-19 09:24:59,332] [pool-1-thread-8] Initializing /data/public/idr0005/Primary_001/2011-04-19-plate-1.HTD: [testng] 09:24:59,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:24:59,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:24:59,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-24-59.log] [testng] 09:24:59,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59a19aae - End of configuration. [testng] [2024-04-19 09:25:28,182] [pool-1-thread-7] Initializing /data/samples/multi-channel-missing-corner/multi-channel.HTD: [testng] 09:25:28,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:25:28,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:25:28,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-25-28.log] [testng] 09:25:28,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8998449 - End of configuration. [testng] [2024-04-19 09:25:28,786] [pool-1-thread-6] Initializing /data/samples/multi-channel-test/multi-channel.HTD: [testng] 09:25:28,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:25:28,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:25:28,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-25-28.log] [testng] 09:25:28,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@173ea1c9 - End of configuration. [testng] [2024-04-19 09:25:28,923] [pool-1-thread-5] Initializing /data/samples/single-site-test/single-site.HTD: [testng] 09:25:28,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:25:28,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:25:28,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-25-28.log] [testng] 09:25:28,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74ea8ca1 - End of configuration. [testng] [2024-04-19 09:25:29,235] [pool-1-thread-4] Initializing /data/samples/thumb-test/2011-04-19-plate-1.HTD: [testng] 09:25:29,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:25:29,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:25:29,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-25-29.log] [testng] 09:25:29,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f31311a - End of configuration. [testng] [2024-04-19 09:25:31,390] [pool-1-thread-3] Initializing /data/samples/multi-z/2011-04-19-plate-1.HTD: [testng] 09:25:31,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:25:31,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:25:31,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-25-31.log] [testng] 09:25:31,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f02101 - End of configuration. [testng] [2024-04-19 09:25:34,506] [pool-1-thread-2] Initializing /data/qa-4207/NSC.HTD: [testng] 09:25:34,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:25:34,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:25:34,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-25-34.log] [testng] 09:25:34,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec426c - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 530, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 34 minutes 16 seconds Finished: SUCCESS