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Started by upstream project "BIOFORMATS-test-repo" build number 1 originally caused by: Started by upstream project "Trigger" build number 1 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12403073233628479056.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_53_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/devspace/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 16:10:45,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 16:10:45,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 16:10:45,540 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:10:45,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:10:45,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 16:10:45,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 16:10:45,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 16:10:45,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:10:45,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:10:45,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 16:10:45,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 16:10:45,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 16:10:45,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 16:10:45,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 16:10:45,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 16:10:45,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 16:10:45,734 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 16:10:45,734 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 16:10:45,734 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 16:10:45,734 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 16:10:45,735 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 16:10:45,735 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 16:10:45,735 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-14 16:10:45,744] [main] java.version = 21 [testng] 16:10:45,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:10:45,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:45,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-14_16-10-45.log] [testng] 16:10:45,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-03-14 16:10:45,792] [main] testng.directory = /data [testng] [2024-03-14 16:10:45,792] [main] testng.configDirectory = /config [testng] [2024-03-14 16:10:45,801] [main] testng.multiplier = 1.0 [testng] [2024-03-14 16:10:45,802] [main] testng.in-memory = false [testng] [2024-03-14 16:10:45,802] [main] testng.allow-missing = false [testng] [2024-03-14 16:10:45,802] [main] user.language = en [testng] [2024-03-14 16:10:45,802] [main] user.country = ${user.country} [testng] [2024-03-14 16:10:45,802] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-14 16:10:46,167] [main] ---------------------------------------- [testng] [2024-03-14 16:10:46,167] [main] Total files: 25 [testng] [2024-03-14 16:10:46,168] [main] Scan time: 0.365 s (14 ms/file) [testng] [2024-03-14 16:10:46,168] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-14 16:10:47,916] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] 16:10:47,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:10:47,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:47,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-14_16-10-47.log] [testng] 16:10:47,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462367d8 - End of configuration. [testng] [2024-03-14 16:10:47,944] [pool-1-thread-12] Initializing /data/misc/planet.png: [testng] 16:10:47,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 16:10:47,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:47,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-14_16-10-47.log] [testng] 16:10:47,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47ca52ea - End of configuration. [testng] [2024-03-14 16:10:47,952] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 16:10:47,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 16:10:47,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:47,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-14_16-10-47.log] [testng] 16:10:47,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bbc3868 - End of configuration. [testng] [2024-03-14 16:10:48,027] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 16:10:48,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 16:10:48,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-14_16-10-48.log] [testng] 16:10:48,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5a5bd4 - End of configuration. [testng] [2024-03-14 16:10:48,060] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] 16:10:48,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 16:10:48,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-14_16-10-48.log] [testng] 16:10:48,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d30184 - End of configuration. [testng] [2024-03-14 16:10:48,094] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 16:10:48,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:10:48,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-14_16-10-48.log] [testng] 16:10:48,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44998faf - End of configuration. [testng] [2024-03-14 16:10:48,117] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 16:10:48,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 16:10:48,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-14_16-10-48.log] [testng] 16:10:48,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@692740ee - End of configuration. [testng] [2024-03-14 16:10:48,188] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 16:10:48,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 16:10:48,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-14_16-10-48.log] [testng] 16:10:48,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61e80ead - End of configuration. [testng] [2024-03-14 16:10:48,363] [pool-1-thread-5] Initializing /data/misc/swlogo.pict: [testng] 16:10:48,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 16:10:48,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-14_16-10-48.log] [testng] 16:10:48,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74dcad7f - End of configuration. [testng] [2024-03-14 16:10:48,391] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] 16:10:48,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 16:10:48,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-14_16-10-48.log] [testng] 16:10:48,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ab58e56 - End of configuration. [testng] [2024-03-14 16:10:48,423] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 16:10:48,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 16:10:48,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-14_16-10-48.log] [testng] 16:10:48,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3467d1f5 - End of configuration. [testng] [2024-03-14 16:10:48,601] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT: [testng] 16:10:48,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 16:10:48,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-14_16-10-48.log] [testng] 16:10:48,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22863cb2 - End of configuration. [testng] [2024-03-14 16:10:50,362] [pool-1-thread-8] Initializing /data/misc/planet2.pict: [testng] [2024-03-14 16:10:50,401] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-03-14 16:10:50,420] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] [2024-03-14 16:10:50,692] [pool-1-thread-12] Initializing /data/jqd/32bit.pict: [testng] [2024-03-14 16:10:50,732] [pool-1-thread-1] Initializing /data/brian/images/YEL.PCT: [testng] [2024-03-14 16:10:50,764] [pool-1-thread-10] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-03-14 16:10:50,787] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-03-14 16:10:50,812] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT: [testng] [2024-03-14 16:10:50,985] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT: [testng] [2024-03-14 16:10:51,228] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-03-14 16:10:51,253] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-03-14 16:10:51,302] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-03-14 16:10:51,379] [pool-1-thread-10] Initializing /data/misc/planet.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS