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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins6943464234819288490.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5305_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:41:37,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:41:37,625 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:41:37,625 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:41:37,626 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:41:37,626 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:41:37,626 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:41:37,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:41:37,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:41:37,628 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:41:37,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:41:37,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:41:37,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:41:37,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:41:37,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:41:37,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:41:37,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:41:37,991 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:41:37,991 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:41:37,991 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:41:37,992 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:41:37,992 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:41:37,993 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:41:37,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 365 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:41:38,004] [main] java.version = 1.8.0_342 [testng] 09:41:38,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:41:38,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:38,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-41-38.log] [testng] 09:41:38,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:41:38,059] [main] testng.directory = /data [testng] [2024-04-19 09:41:38,059] [main] testng.configDirectory = /config [testng] [2024-04-19 09:41:38,076] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:41:38,076] [main] testng.in-memory = false [testng] [2024-04-19 09:41:38,076] [main] testng.allow-missing = false [testng] [2024-04-19 09:41:38,076] [main] user.language = en [testng] [2024-04-19 09:41:38,076] [main] user.country = ${user.country} [testng] [2024-04-19 09:41:38,077] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:48:02,283] [main] ---------------------------------------- [testng] [2024-04-19 09:48:02,284] [main] Total files: 7329 [testng] [2024-04-19 09:48:02,284] [main] Scan time: 384.206 s (52 ms/file) [testng] [2024-04-19 09:48:02,284] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:51:35,388] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 09:51:35,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:51:35,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:35,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-51-35.log] [testng] 09:51:35,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ff123 - End of configuration. [testng] [2024-04-19 09:51:35,448] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 09:51:35,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:51:35,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:35,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-51-35.log] [testng] 09:51:35,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@383308cc - End of configuration. [testng] [2024-04-19 09:51:35,488] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 09:51:35,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:51:35,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:35,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-51-35.log] [testng] 09:51:35,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b276b1 - End of configuration. [testng] [2024-04-19 09:51:35,588] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 09:51:35,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:51:35,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:35,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-51-35.log] [testng] 09:51:35,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ffc08e - End of configuration. [testng] [2024-04-19 09:51:35,697] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 09:51:35,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:51:35,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:35,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-51-35.log] [testng] 09:51:35,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15e21efc - End of configuration. [testng] [2024-04-19 09:51:35,830] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 09:51:35,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:51:35,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:35,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-51-35.log] [testng] 09:51:35,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e8c419 - End of configuration. [testng] [2024-04-19 09:51:35,901] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 09:51:35,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:51:35,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:35,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-51-35.log] [testng] 09:51:35,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@745ffac - End of configuration. [testng] [2024-04-19 09:51:36,025] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 09:51:36,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:51:36,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:36,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-51-36.log] [testng] 09:51:36,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7031ae19 - End of configuration. [testng] [2024-04-19 09:51:36,174] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 09:51:36,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:51:36,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:36,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-51-36.log] [testng] 09:51:36,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49b4167 - End of configuration. [testng] [2024-04-19 09:51:36,221] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 09:51:36,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:51:36,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:36,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-51-36.log] [testng] 09:51:36,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bea6d06 - End of configuration. [testng] [2024-04-19 09:51:36,341] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 09:51:36,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:51:36,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:36,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-51-36.log] [testng] 09:51:36,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c303668 - End of configuration. [testng] [2024-04-19 09:51:36,555] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 09:51:36,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:51:36,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:51:36,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-51-36.log] [testng] 09:51:36,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb3114b - End of configuration. [testng] [2024-04-19 09:51:38,613] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-04-19 09:51:39,432] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-19 09:51:39,879] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-19 09:51:41,044] [pool-1-thread-4] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-19 09:51:41,258] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-19 09:51:42,050] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-19 09:51:42,286] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-04-19 09:51:42,362] [pool-1-thread-11] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-19 09:51:42,411] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-04-19 09:51:42,532] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-19 09:51:42,806] [pool-1-thread-4] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-04-19 09:51:43,431] [pool-1-thread-11] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-04-19 09:51:43,584] [pool-1-thread-7] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-04-19 09:51:44,175] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-04-19 09:51:44,266] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-19 09:51:44,277] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-19 09:51:44,452] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-19 09:51:45,249] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-19 09:51:46,444] [pool-1-thread-12] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-04-19 09:51:46,574] [pool-1-thread-11] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-19 09:51:46,803] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-19 09:51:47,013] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-19 09:51:47,057] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-19 09:51:47,343] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-04-19 09:51:47,480] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-19 09:51:47,503] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-19 09:51:47,726] [pool-1-thread-11] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-19 09:51:47,935] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-04-19 09:51:48,147] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-19 09:51:48,268] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-19 09:51:48,321] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-19 09:51:48,358] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-19 09:51:48,411] [pool-1-thread-1] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-04-19 09:51:48,684] [pool-1-thread-3] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-04-19 09:51:49,070] [pool-1-thread-12] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-19 09:51:49,380] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-19 09:51:49,878] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-04-19 09:51:49,927] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-19 09:51:51,030] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-19 09:51:51,044] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-19 09:51:51,077] [pool-1-thread-8] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-19 09:52:00,049] [pool-1-thread-11] Initializing /data/josh/2101to800.stk: [testng] [2024-04-19 09:52:00,662] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-19 09:52:00,952] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-04-19 09:52:00,983] [pool-1-thread-1] Initializing /data/jerome/deconv.STK: [testng] [2024-04-19 09:52:01,033] [pool-1-thread-6] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-04-19 09:52:01,310] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-19 09:52:01,519] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-19 09:52:01,671] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-04-19 09:52:02,048] [pool-1-thread-12] Initializing /data/david/tl4.tif: [testng] [2024-04-19 09:52:03,379] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:03,515] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-19 09:52:05,921] [pool-1-thread-3] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-19 09:52:06,071] [pool-1-thread-5] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-19 09:52:06,225] [pool-1-thread-6] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-19 09:52:08,941] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:09,078] [pool-1-thread-1] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-19 09:52:09,588] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:09,778] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:09,888] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-19 09:52:09,914] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-19 09:52:10,127] [pool-1-thread-9] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-19 09:52:11,390] [pool-1-thread-1] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-19 09:52:11,436] [pool-1-thread-5] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-19 09:52:12,577] [pool-1-thread-11] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-04-19 09:52:12,728] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-19 09:52:12,799] [pool-1-thread-12] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-04-19 09:52:13,129] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-19 09:52:13,158] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-19 09:52:13,381] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:14,177] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-19 09:52:14,694] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-19 09:52:15,341] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-04-19 09:52:15,402] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-19 09:52:15,552] [pool-1-thread-2] Initializing 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[2024-04-19 09:52:23,448] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-04-19 09:52:26,202] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-19 09:52:26,288] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-19 09:52:26,943] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-19 09:52:27,201] [pool-1-thread-3] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-19 09:52:27,509] [pool-1-thread-2] Initializing /data/samples/diatoms3d.stk: [testng] [2024-04-19 09:52:27,600] [pool-1-thread-6] Initializing /data/qa-16915/m-02.tif: [testng] [2024-04-19 09:52:30,101] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-19 09:52:30,488] [pool-1-thread-12] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-04-19 09:52:30,961] [pool-1-thread-1] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-19 09:52:33,097] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2024-04-19 09:52:33,472] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-04-19 09:52:34,123] [pool-1-thread-12] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-04-19 09:52:34,939] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:35,619] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-04-19 09:52:36,191] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:36,721] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-19 09:52:37,144] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-04-19 09:52:37,378] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-04-19 09:52:37,985] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-19 09:52:39,981] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-19 09:52:40,069] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-04-19 09:52:40,167] [pool-1-thread-2] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-19 09:52:41,227] [pool-1-thread-2] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-19 09:52:41,275] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-19 09:52:41,342] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-04-19 09:52:41,406] [pool-1-thread-9] Used files list does not include base file [testng] [2024-04-19 09:52:42,214] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:42,683] [pool-1-thread-3] Initializing /data/dave/Z Series.stk: [testng] [2024-04-19 09:52:42,918] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:43,033] [pool-1-thread-2] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-04-19 09:52:43,240] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-04-19 09:52:43,359] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-19 09:52:43,717] [pool-1-thread-6] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-04-19 09:52:44,260] [pool-1-thread-4] Initializing 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09:52:55,185] [pool-1-thread-6] Initializing /data/samples/10xcalib.tif: [testng] [2024-04-19 09:52:55,271] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-19 09:52:55,338] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-19 09:52:55,475] [pool-1-thread-2] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-19 09:52:55,540] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-04-19 09:52:57,816] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-04-19 09:52:57,971] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-19 09:52:58,302] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-04-19 09:52:58,501] [pool-1-thread-4] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-04-19 09:52:58,779] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-19 09:52:59,415] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-19 09:52:59,956] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-19 09:53:00,114] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-19 09:53:00,217] [pool-1-thread-2] Initializing /data/josh/2101to600e.stk: [testng] [2024-04-19 09:53:01,266] [pool-1-thread-8] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-04-19 09:53:01,383] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-04-19 09:53:01,436] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-19 09:53:01,890] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-19 09:53:02,343] [pool-1-thread-11] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-19 09:53:02,497] [pool-1-thread-5] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-19 09:53:02,572] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-19 09:53:02,630] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-19 09:53:03,438] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:53:03,496] [pool-1-thread-10] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-19 09:53:03,533] [pool-1-thread-11] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-04-19 09:53:03,810] [pool-1-thread-6] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-19 09:53:04,177] [pool-1-thread-5] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-19 09:53:04,402] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-19 09:53:04,447] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-19 09:53:04,870] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-04-19 09:53:04,933] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-19 09:53:05,243] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-04-19 09:53:05,294] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-19 09:53:05,295] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-04-19 09:53:05,378] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-19 09:53:05,407] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-04-19 09:53:05,491] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-19 09:53:06,099] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-19 09:53:06,281] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:53:06,646] [pool-1-thread-5] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-04-19 09:53:06,844] [pool-1-thread-8] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-19 09:53:07,002] [pool-1-thread-4] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-04-19 09:53:07,572] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-19 09:53:07,636] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-19 09:53:07,646] [pool-1-thread-10] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-19 09:53:08,060] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-19 09:53:08,119] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2024-04-19 09:53:08,546] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-19 09:53:08,678] [pool-1-thread-6] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-19 09:53:08,788] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-19 09:53:08,851] [pool-1-thread-2] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-19 09:53:09,321] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-19 09:53:09,577] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-19 09:53:10,073] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-04-19 09:53:10,138] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-04-19 09:53:10,402] [pool-1-thread-10] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-04-19 09:53:28,665] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-04-19 09:53:28,717] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-19 09:53:28,828] [pool-1-thread-8] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-19 09:53:29,006] [pool-1-thread-12] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-19 09:53:29,154] [pool-1-thread-11] Initializing /data/grant/X.STK: [testng] [2024-04-19 09:53:29,549] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-19 09:53:29,611] [pool-1-thread-6] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-19 09:53:30,180] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-19 09:53:31,302] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-19 09:53:32,144] [pool-1-thread-5] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-19 09:53:32,331] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-19 09:53:33,295] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-19 09:53:33,368] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-19 09:53:33,527] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-04-19 09:53:33,689] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-19 09:53:34,517] [pool-1-thread-11] Initializing /data/thomas/test.tif: [testng] [2024-04-19 09:53:34,735] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-04-19 09:53:34,904] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-19 09:53:35,054] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-04-19 09:53:35,458] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-19 09:53:35,526] [pool-1-thread-9] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-19 09:53:35,598] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-04-19 09:53:35,623] [pool-1-thread-2] Initializing /data/qa-16887/m-01.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 12 seconds Finished: SUCCESS