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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins525053423112443449.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5309_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:52:50,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:52:50,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:52:50,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:52:50,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:52:50,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:52:50,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:52:50,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:52:50,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:52:50,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:52:50,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:52:50,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:52:50,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:52:50,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:52:50,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:52:50,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:52:50,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:52:50,798 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:52:50,798 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:52:50,798 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:52:50,799 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:52:50,799 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:52:50,799 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:52:50,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:52:50,809] [main] java.version = 1.8.0_342 [testng] 09:52:50,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:52:50,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:52:50,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-52-50.log] [testng] 09:52:50,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:52:50,874] [main] testng.directory = /data [testng] [2024-04-19 09:52:50,874] [main] testng.configDirectory = /config [testng] [2024-04-19 09:52:50,913] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:52:50,913] [main] testng.in-memory = false [testng] [2024-04-19 09:52:50,913] [main] testng.allow-missing = false [testng] [2024-04-19 09:52:50,913] [main] user.language = en [testng] [2024-04-19 09:52:50,913] [main] user.country = ${user.country} [testng] [2024-04-19 09:52:50,914] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:53:00,931] [main] ---------------------------------------- [testng] [2024-04-19 09:53:00,931] [main] Total files: 268 [testng] [2024-04-19 09:53:00,931] [main] Scan time: 10.017 s (37 ms/file) [testng] [2024-04-19 09:53:00,931] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:53:14,151] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 09:53:14,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:53:14,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-53-14.log] [testng] 09:53:14,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21051b7 - End of configuration. [testng] [2024-04-19 09:53:14,197] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] 09:53:14,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:53:14,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-53-14.log] [testng] 09:53:14,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@483d0361 - End of configuration. [testng] [2024-04-19 09:53:14,276] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA: [testng] 09:53:14,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:53:14,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-53-14.log] [testng] 09:53:14,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6913b3b5 - End of configuration. [testng] [2024-04-19 09:53:14,297] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 09:53:14,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:53:14,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-53-14.log] [testng] 09:53:14,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@349e2538 - End of configuration. [testng] [2024-04-19 09:53:14,322] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] 09:53:14,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:53:14,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-53-14.log] [testng] 09:53:14,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5176cc34 - End of configuration. [testng] [2024-04-19 09:53:14,348] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] 09:53:14,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:53:14,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-53-14.log] [testng] 09:53:14,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11856d41 - End of configuration. [testng] [2024-04-19 09:53:14,412] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 09:53:14,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:53:14,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-53-14.log] [testng] 09:53:14,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31011e57 - End of configuration. [testng] [2024-04-19 09:53:14,463] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] 09:53:14,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:53:14,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-53-14.log] [testng] 09:53:14,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c74bc1 - End of configuration. [testng] [2024-04-19 09:53:14,482] [pool-1-thread-5] Initializing /data/steve/FITS/M51.fits: [testng] 09:53:14,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:53:14,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-53-14.log] [testng] 09:53:14,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@498d2330 - End of configuration. [testng] [2024-04-19 09:53:14,492] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 09:53:14,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:53:14,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-53-14.log] [testng] 09:53:14,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9b16a - End of configuration. [testng] [2024-04-19 09:53:14,521] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] 09:53:14,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:53:14,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-53-14.log] [testng] 09:53:14,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54917ae3 - End of configuration. [testng] [2024-04-19 09:53:14,529] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] 09:53:14,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:53:14,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:53:14,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-53-14.log] [testng] 09:53:14,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46f87f2c - End of configuration. [testng] [2024-04-19 09:53:16,393] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-04-19 09:53:16,415] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-04-19 09:53:16,452] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-04-19 09:53:16,550] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-04-19 09:53:16,567] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-04-19 09:53:16,594] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-04-19 09:53:16,608] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-04-19 09:53:16,624] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-04-19 09:53:16,635] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-04-19 09:53:16,670] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-04-19 09:53:16,695] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-04-19 09:53:17,096] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-04-19 09:53:17,122] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-04-19 09:53:17,176] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-04-19 09:53:17,214] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-04-19 09:53:17,281] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-04-19 09:53:17,336] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-04-19 09:53:17,390] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-04-19 09:53:17,415] [pool-1-thread-1] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-04-19 09:53:17,550] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-04-19 09:53:17,580] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-04-19 09:53:17,601] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-04-19 09:53:17,622] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-04-19 09:53:17,690] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-04-19 09:53:17,785] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-04-19 09:53:17,842] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-04-19 09:53:17,892] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-04-19 09:53:17,916] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-04-19 09:53:17,924] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-04-19 09:53:17,984] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-04-19 09:53:18,027] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-04-19 09:53:18,062] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-04-19 09:53:18,120] [pool-1-thread-4] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-04-19 09:53:18,220] [pool-1-thread-5] Initializing /data/steve/FITS/M13.fits: [testng] [2024-04-19 09:53:18,248] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-04-19 09:53:18,317] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-04-19 09:53:18,345] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-04-19 09:53:18,415] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-04-19 09:53:18,452] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-04-19 09:53:18,474] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-04-19 09:53:18,483] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-04-19 09:53:18,501] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-04-19 09:53:18,516] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-04-19 09:53:18,548] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-04-19 09:53:18,562] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-04-19 09:53:18,746] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-04-19 09:53:18,798] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-04-19 09:53:18,849] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-04-19 09:53:18,876] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-04-19 09:53:18,916] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-04-19 09:53:18,960] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-04-19 09:53:18,975] [pool-1-thread-7] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-04-19 09:53:18,984] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-04-19 09:53:19,078] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-04-19 09:53:19,116] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-04-19 09:53:19,171] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-04-19 09:53:19,182] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-04-19 09:53:19,191] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-04-19 09:53:19,255] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-04-19 09:53:19,296] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-04-19 09:53:19,385] [pool-1-thread-2] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-04-19 09:53:19,442] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-04-19 09:53:19,525] [pool-1-thread-8] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-04-19 09:53:19,579] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-04-19 09:53:19,624] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-04-19 09:53:19,633] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-04-19 09:53:19,677] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-04-19 09:53:19,721] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-04-19 09:53:19,754] [pool-1-thread-7] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-04-19 09:53:19,884] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-04-19 09:53:19,940] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-04-19 09:53:19,970] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-04-19 09:53:20,028] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-04-19 09:53:20,041] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-04-19 09:53:20,064] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-04-19 09:53:20,120] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-04-19 09:53:20,163] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-04-19 09:53:20,198] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-04-19 09:53:20,219] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-04-19 09:53:20,242] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-04-19 09:53:20,248] [pool-1-thread-12] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-04-19 09:53:20,320] [pool-1-thread-2] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-04-19 09:53:20,392] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-04-19 09:53:20,450] [pool-1-thread-7] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-04-19 09:53:20,518] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-04-19 09:53:20,573] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-04-19 09:53:20,598] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-04-19 09:53:20,669] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-04-19 09:53:20,694] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-04-19 09:53:20,704] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-04-19 09:53:20,820] [pool-1-thread-10] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-04-19 09:53:20,901] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-04-19 09:53:20,976] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-04-19 09:53:21,005] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-04-19 09:53:21,053] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-04-19 09:53:21,163] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-04-19 09:53:21,199] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-04-19 09:53:21,253] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-04-19 09:53:21,318] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-04-19 09:53:21,389] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-04-19 09:53:21,493] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-04-19 09:53:21,576] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-04-19 09:53:21,655] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits: [testng] [2024-04-19 09:53:21,687] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-04-19 09:53:21,737] [pool-1-thread-3] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-04-19 09:53:21,771] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-04-19 09:53:21,782] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-04-19 09:53:21,800] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-04-19 09:53:21,837] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-04-19 09:53:21,940] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-04-19 09:53:22,057] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-04-19 09:53:22,072] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-04-19 09:53:22,112] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-04-19 09:53:22,197] [pool-1-thread-10] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-04-19 09:53:22,229] [pool-1-thread-4] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-04-19 09:53:22,336] [pool-1-thread-2] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-04-19 09:53:22,344] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-04-19 09:53:22,575] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-04-19 09:53:22,604] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-04-19 09:53:22,646] [pool-1-thread-3] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-04-19 09:53:22,691] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-04-19 09:53:22,746] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-04-19 09:53:22,858] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-04-19 09:53:22,907] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-04-19 09:53:22,941] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-04-19 09:53:22,963] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-04-19 09:53:23,001] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-04-19 09:53:23,043] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-04-19 09:53:23,136] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-04-19 09:53:23,142] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-04-19 09:53:23,208] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-04-19 09:53:23,308] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-04-19 09:53:23,344] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-04-19 09:53:23,387] [pool-1-thread-6] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-04-19 09:53:23,394] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-04-19 09:53:23,421] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-04-19 09:53:23,492] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-04-19 09:53:23,586] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-04-19 09:53:23,647] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-04-19 09:53:23,669] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-04-19 09:53:23,702] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-04-19 09:53:23,728] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-04-19 09:53:23,748] [pool-1-thread-8] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-04-19 09:53:23,790] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-04-19 09:53:23,837] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-04-19 09:53:23,905] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-04-19 09:53:24,021] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-04-19 09:53:24,044] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 37 seconds Finished: SUCCESS