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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins7360192035237556664.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5347_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:12:15,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:12:15,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:12:15,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:12:15,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:12:15,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:12:15,360 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:12:15,360 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:12:15,361 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:12:15,361 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 10:12:15,362 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 10:12:15,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 709 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 10:12:15,374] [main] java.version = 1.8.0_342 [testng] 10:12:15,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:12:15,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:15,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_10-12-15.log] [testng] 10:12:15,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 10:12:15,466] [main] testng.directory = /data [testng] [2024-04-19 10:12:15,467] [main] testng.configDirectory = /config [testng] [2024-04-19 10:12:15,491] [main] testng.multiplier = 1.0 [testng] [2024-04-19 10:12:15,491] [main] testng.in-memory = false [testng] [2024-04-19 10:12:15,491] [main] testng.allow-missing = false [testng] [2024-04-19 10:12:15,491] [main] user.language = en [testng] [2024-04-19 10:12:15,491] [main] user.country = ${user.country} [testng] [2024-04-19 10:12:15,492] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 10:12:16,148] [main] ---------------------------------------- [testng] [2024-04-19 10:12:16,148] [main] Total files: 21 [testng] [2024-04-19 10:12:16,149] [main] Scan time: 0.656 s (31 ms/file) [testng] [2024-04-19 10:12:16,149] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 10:12:17,881] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 10:12:17,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:12:17,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_10-12-17.log] [testng] 10:12:17,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@520c296a - End of configuration. [testng] [2024-04-19 10:12:17,931] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 10:12:17,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:12:17,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_10-12-17.log] [testng] 10:12:17,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21da2071 - End of configuration. [testng] [2024-04-19 10:12:17,938] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 10:12:17,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:12:17,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_10-12-17.log] [testng] 10:12:17,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@be84b4e - End of configuration. [testng] [2024-04-19 10:12:17,945] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 10:12:17,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:12:17,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_10-12-17.log] [testng] 10:12:17,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6edad9b5 - End of configuration. [testng] [2024-04-19 10:12:17,955] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 10:12:17,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:12:17,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_10-12-17.log] [testng] 10:12:17,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@643bac97 - End of configuration. [testng] [2024-04-19 10:12:17,963] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 10:12:17,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:12:17,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_10-12-17.log] [testng] 10:12:17,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8aa321 - End of configuration. [testng] [2024-04-19 10:12:17,972] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 10:12:17,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:12:17,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_10-12-17.log] [testng] 10:12:17,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21fbe266 - End of configuration. [testng] [2024-04-19 10:12:17,980] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 10:12:17,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:12:17,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:17,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_10-12-17.log] [testng] 10:12:17,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bd4ac2 - End of configuration. [testng] [2024-04-19 10:12:18,017] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 10:12:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:12:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:18,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_10-12-18.log] [testng] 10:12:18,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@691e2ade - End of configuration. [testng] [2024-04-19 10:12:18,027] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 10:12:18,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:12:18,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:18,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_10-12-18.log] [testng] 10:12:18,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@880d151 - End of configuration. [testng] [2024-04-19 10:12:18,033] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 10:12:18,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:12:18,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:18,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_10-12-18.log] [testng] 10:12:18,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e23d1d1 - End of configuration. [testng] [2024-04-19 10:12:18,040] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 10:12:18,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:12:18,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:18,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_10-12-18.log] [testng] 10:12:18,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c1f86fe - End of configuration. [testng] [2024-04-19 10:12:19,841] [pool-1-thread-4] Initializing /data/samples/william_wong02.png: [testng] [2024-04-19 10:12:19,846] [pool-1-thread-2] Initializing /data/samples/spinfox.png: [testng] [2024-04-19 10:12:19,851] [pool-1-thread-3] Initializing /data/samples/william_wong01.png: [testng] [2024-04-19 10:12:19,859] [pool-1-thread-5] Initializing /data/samples/william_wong05.png: [testng] [2024-04-19 10:12:19,865] [pool-1-thread-11] Initializing /data/colin/test.sfstdge.png: [testng] [2024-04-19 10:12:19,868] [pool-1-thread-8] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-04-19 10:12:19,873] [pool-1-thread-12] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-04-19 10:12:19,880] [pool-1-thread-10] Initializing /data/samples/chompy2.png: [testng] [2024-04-19 10:12:19,884] [pool-1-thread-1] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS