![[Jenkins]](/jenkins/static/b864b239/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins10566446609014584293.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5353_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:17:05,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:17:05,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 10:17:05,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:17:05,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:17:05,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:17:05,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:17:05,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:17:05,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:17:05,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:17:05,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:17:05,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:17:05,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:17:05,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:17:05,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:17:06,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:17:06,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:17:06,036 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:17:06,036 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:17:06,036 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:17:06,037 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:17:06,037 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 10:17:06,037 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 10:17:06,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 279 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 10:17:06,047] [main] java.version = 1.8.0_342 [testng] 10:17:06,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:17:06,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:06,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_10-17-06.log] [testng] 10:17:06,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 10:17:06,104] [main] testng.directory = /data [testng] [2024-04-19 10:17:06,105] [main] testng.configDirectory = /config [testng] [2024-04-19 10:17:06,117] [main] testng.multiplier = 1.0 [testng] [2024-04-19 10:17:06,117] [main] testng.in-memory = false [testng] [2024-04-19 10:17:06,118] [main] testng.allow-missing = false [testng] [2024-04-19 10:17:06,118] [main] user.language = en [testng] [2024-04-19 10:17:06,118] [main] user.country = ${user.country} [testng] [2024-04-19 10:17:06,118] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 10:17:06,577] [main] ---------------------------------------- [testng] [2024-04-19 10:17:06,577] [main] Total files: 18 [testng] [2024-04-19 10:17:06,578] [main] Scan time: 0.459 s (25 ms/file) [testng] [2024-04-19 10:17:06,578] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 10:17:08,371] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd: [testng] 10:17:08,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:17:08,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_10-17-08.log] [testng] 10:17:08,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a162ee3 - End of configuration. [testng] [2024-04-19 10:17:08,409] [pool-1-thread-12] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 10:17:08,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:17:08,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_10-17-08.log] [testng] 10:17:08,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@489921da - End of configuration. [testng] [2024-04-19 10:17:08,435] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 10:17:08,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:17:08,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_10-17-08.log] [testng] 10:17:08,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df3ec5 - End of configuration. [testng] [2024-04-19 10:17:08,453] [pool-1-thread-10] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 10:17:08,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:17:08,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_10-17-08.log] [testng] 10:17:08,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be2f3f2 - End of configuration. [testng] [2024-04-19 10:17:08,480] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 10:17:08,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:17:08,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_10-17-08.log] [testng] 10:17:08,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36cec70f - End of configuration. [testng] [2024-04-19 10:17:08,496] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 10:17:08,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:17:08,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_10-17-08.log] [testng] 10:17:08,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3e468b - End of configuration. [testng] [2024-04-19 10:17:08,677] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd: [testng] 10:17:08,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:17:08,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_10-17-08.log] [testng] 10:17:08,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ea449 - End of configuration. [testng] [2024-04-19 10:17:08,723] [pool-1-thread-6] Initializing /data/misc/vig_drawing_1.psd: [testng] 10:17:08,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:17:08,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_10-17-08.log] [testng] 10:17:08,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f8bfcb - End of configuration. [testng] [2024-04-19 10:17:08,773] [pool-1-thread-5] Initializing /data/cris/house.tif: [testng] 10:17:08,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:17:08,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_10-17-08.log] [testng] 10:17:08,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d44177e - End of configuration. [testng] [2024-04-19 10:17:08,813] [pool-1-thread-4] Initializing /data/misc/smilie.psd: [testng] 10:17:08,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:17:08,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_10-17-08.log] [testng] 10:17:08,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ab948cb - End of configuration. [testng] [2024-04-19 10:17:08,849] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 10:17:08,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:17:08,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_10-17-08.log] [testng] 10:17:08,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3042cb6c - End of configuration. [testng] [2024-04-19 10:17:08,989] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd: [testng] 10:17:08,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:17:08,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:17:08,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_10-17-08.log] [testng] 10:17:08,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a9a7e02 - End of configuration. [testng] [2024-04-19 10:17:11,753] [pool-1-thread-5] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-04-19 10:17:12,484] [pool-1-thread-7] Initializing /data/ascb/423.psd: [testng] [2024-04-19 10:17:12,574] [pool-1-thread-4] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-04-19 10:17:12,670] [pool-1-thread-9] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-04-19 10:17:12,733] [pool-1-thread-2] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-04-19 10:17:14,202] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS