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Started by upstream project "BIOFORMATS-test-repo" build number 39
originally caused by:
 Started by upstream project "Trigger" build number 45
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9728347774705186631.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5465_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:47:15,389 |-INFO in ch.qos.logback.classic.util.ContextInitializer@61386958 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:47:15,391 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:47:15,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:47:15,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@61386958 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 4 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:47:15,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@61386958 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:47:15,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@61386958 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:47:15,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:47:15,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:47:15,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:47:15,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:47:15,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:47:15,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:47:15,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:47:15,794 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:47:15,794 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:47:15,794 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:47:15,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:47:15,795 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:47:15,797 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:47:15,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@61386958 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 402 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-20 01:47:15,815] [main] java.version = 11.0.16
   [testng] 01:47:15,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:47:15,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:15,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-20_01-47-15.log]
   [testng] 01:47:15,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-20 01:47:15,921] [main] testng.directory = /data
   [testng] [2024-04-20 01:47:15,921] [main] testng.configDirectory = /config
   [testng] [2024-04-20 01:47:15,993] [main] testng.multiplier = 1.0
   [testng] [2024-04-20 01:47:15,996] [main] testng.in-memory = false
   [testng] [2024-04-20 01:47:15,997] [main] testng.allow-missing = false
   [testng] [2024-04-20 01:47:15,997] [main] user.language = en
   [testng] [2024-04-20 01:47:15,997] [main] user.country = ${user.country}
   [testng] [2024-04-20 01:47:15,997] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-20 01:47:17,322] [main] ----------------------------------------
   [testng] [2024-04-20 01:47:17,322] [main] Total files: 16
   [testng] [2024-04-20 01:47:17,323] [main] Scan time: 1.324 s (82 ms/file)
   [testng] [2024-04-20 01:47:17,323] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-20 01:47:27,862] [pool-1-thread-1] Initializing /data/samples/5371.afi: 
   [testng] 01:47:27,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:47:27,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:27,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-20_01-47-27.log]
   [testng] 01:47:27,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b74673 - End of configuration.
   [testng] [2024-04-20 01:47:28,004] [pool-1-thread-12] Initializing /data/samples/5440.afi: 
   [testng] 01:47:28,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:47:28,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:28,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-20_01-47-28.log]
   [testng] 01:47:28,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@533170ab - End of configuration.
   [testng] [2024-04-20 01:47:28,271] [pool-1-thread-11] Initializing /data/samples/5358.afi: 
   [testng] 01:47:28,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:47:28,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:28,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-20_01-47-28.log]
   [testng] 01:47:28,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@161799e6 - End of configuration.
   [testng] [2024-04-20 01:47:28,511] [pool-1-thread-10] Initializing /data/samples/5339.afi: 
   [testng] 01:47:28,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:47:28,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:28,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-20_01-47-28.log]
   [testng] 01:47:28,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b8a6ddc - End of configuration.
   [testng] [2024-04-20 01:47:28,682] [pool-1-thread-9] Initializing /data/samples/5306.afi: 
   [testng] 01:47:28,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:47:28,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:28,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-20_01-47-28.log]
   [testng] 01:47:28,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5089478b - End of configuration.
   [testng] [2024-04-20 01:47:28,824] [pool-1-thread-8] Initializing /data/samples/5414.afi: 
   [testng] 01:47:28,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:47:28,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:28,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-20_01-47-28.log]
   [testng] 01:47:28,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@236ab365 - End of configuration.
   [testng] [2024-04-20 01:47:28,936] [pool-1-thread-7] Initializing /data/samples/5387.afi: 
   [testng] 01:47:28,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:47:28,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:28,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-20_01-47-28.log]
   [testng] 01:47:28,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e72cf1 - End of configuration.
   [testng] [2024-04-20 01:47:29,092] [pool-1-thread-6] Initializing /data/samples/5407.afi: 
   [testng] 01:47:29,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:47:29,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:29,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-20_01-47-29.log]
   [testng] 01:47:29,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8d9162 - End of configuration.
   [testng] [2024-04-20 01:47:29,158] [pool-1-thread-5] Initializing /data/samples/5383.afi: 
   [testng] 01:47:29,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:47:29,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:29,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-20_01-47-29.log]
   [testng] 01:47:29,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b0f8cd4 - End of configuration.
   [testng] [2024-04-20 01:47:29,255] [pool-1-thread-4] Initializing /data/samples/5446.afi: 
   [testng] 01:47:29,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:47:29,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:29,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-20_01-47-29.log]
   [testng] 01:47:29,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4426d9d9 - End of configuration.
   [testng] [2024-04-20 01:47:29,410] [pool-1-thread-3] Initializing /data/samples/5347.afi: 
   [testng] 01:47:29,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:47:29,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:29,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-20_01-47-29.log]
   [testng] 01:47:29,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4266044c - End of configuration.
   [testng] [2024-04-20 01:47:29,556] [pool-1-thread-2] Initializing /data/samples/5351.afi: 
   [testng] 01:47:29,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:47:29,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:47:29,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-20_01-47-29.log]
   [testng] 01:47:29,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7989283e - End of configuration.
   [testng] [2024-04-20 01:48:19,593] [pool-1-thread-8] Initializing /data/samples/5400.afi: 
   [testng] [2024-04-20 01:48:23,541] [pool-1-thread-9] Initializing /data/samples/5343.afi: 
   [testng] [2024-04-20 01:48:26,997] [pool-1-thread-11] Initializing /data/samples/5365.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 12 seconds
Finished: SUCCESS