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Started by upstream project "BIOFORMATS-test-repo" build number 344 originally caused by: Started by upstream project "Trigger" build number 370 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13230025870255948278.sh + '[' targa = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_54701_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:37:29,643 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:37:29,645 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:37:29,645 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:37:29,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:37:29,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:37:29,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:37:29,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:37:29,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:37:29,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:37:29,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:37:29,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:37:29,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:37:29,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:37:29,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:37:29,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:37:29,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:37:29,855 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:37:29,855 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:37:29,855 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:37:29,856 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:37:29,856 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:37:29,857 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:37:29,857 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-13 00:37:29,866] [main] java.version = 21 [testng] 00:37:29,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:37:29,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:29,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-13_00-37-29.log] [testng] 00:37:29,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-02-13 00:37:29,918] [main] testng.directory = /data [testng] [2025-02-13 00:37:29,918] [main] testng.configDirectory = /config [testng] [2025-02-13 00:37:29,928] [main] testng.multiplier = 1.0 [testng] [2025-02-13 00:37:29,929] [main] testng.in-memory = false [testng] [2025-02-13 00:37:29,929] [main] testng.allow-missing = false [testng] [2025-02-13 00:37:29,929] [main] user.language = en [testng] [2025-02-13 00:37:29,929] [main] user.country = ${user.country} [testng] [2025-02-13 00:37:29,929] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-13 00:37:30,616] [main] ---------------------------------------- [testng] [2025-02-13 00:37:30,616] [main] Total files: 21 [testng] [2025-02-13 00:37:30,616] [main] Scan time: 0.686 s (32 ms/file) [testng] [2025-02-13 00:37:30,616] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-13 00:37:35,748] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA: [testng] 00:37:35,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:37:35,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:35,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-13_00-37-35.log] [testng] 00:37:35,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e15a03b - End of configuration. [testng] [2025-02-13 00:37:35,866] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA: [testng] 00:37:35,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:37:35,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:35,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-13_00-37-35.log] [testng] 00:37:35,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54efd25b - End of configuration. [testng] [2025-02-13 00:37:36,087] [pool-1-thread-11] Initializing /data/samples/UBW8.TGA: [testng] 00:37:36,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:37:36,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:36,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-13_00-37-36.log] [testng] 00:37:36,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d2e6af6 - End of configuration. [testng] [2025-02-13 00:37:36,274] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] 00:37:36,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:37:36,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:36,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-13_00-37-36.log] [testng] 00:37:36,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ef91a63 - End of configuration. [testng] [2025-02-13 00:37:36,415] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] 00:37:36,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:37:36,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:36,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-13_00-37-36.log] [testng] 00:37:36,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e9e0358 - End of configuration. [testng] [2025-02-13 00:37:36,573] [pool-1-thread-8] Initializing /data/samples/XING_B24.TGA: [testng] 00:37:36,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:37:36,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:36,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-13_00-37-36.log] [testng] 00:37:36,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50ad8a6e - End of configuration. [testng] [2025-02-13 00:37:36,728] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] 00:37:36,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:37:36,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:36,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-13_00-37-36.log] [testng] 00:37:36,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d1aeb10 - End of configuration. [testng] [2025-02-13 00:37:36,909] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:37:36,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:37:36,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:36,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-13_00-37-36.log] [testng] 00:37:36,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c9c908 - End of configuration. [testng] [2025-02-13 00:37:37,194] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] 00:37:37,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:37:37,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:37,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-13_00-37-37.log] [testng] 00:37:37,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@668bb69b - End of configuration. [testng] [2025-02-13 00:37:37,632] [pool-1-thread-4] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:37:37,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:37:37,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:37,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-13_00-37-37.log] [testng] 00:37:37,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a645f2b - End of configuration. [testng] [2025-02-13 00:37:38,040] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:37:38,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:37:38,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:38,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-13_00-37-38.log] [testng] 00:37:38,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d1a6369 - End of configuration. [testng] [2025-02-13 00:37:38,369] [pool-1-thread-2] Initializing /data/samples/UTC16.TGA: [testng] 00:37:38,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:37:38,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:38,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-13_00-37-38.log] [testng] 00:37:38,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5668119c - End of configuration. [testng] [2025-02-13 00:37:43,807] [pool-1-thread-11] Initializing /data/samples/XING_T16.TGA: [testng] [2025-02-13 00:37:44,030] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] [2025-02-13 00:37:44,226] [pool-1-thread-4] Initializing /data/samples/UCM8.TGA: [testng] [2025-02-13 00:37:44,445] [pool-1-thread-7] Initializing /data/samples/FLAG_B24.TGA: [testng] [2025-02-13 00:37:44,833] [pool-1-thread-9] Initializing /data/samples/CCM8.TGA: [testng] [2025-02-13 00:37:45,323] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] [2025-02-13 00:37:45,829] [pool-1-thread-12] Initializing /data/samples/MARBLES.TGA: [testng] [2025-02-13 00:37:46,265] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] [2025-02-13 00:37:46,500] [pool-1-thread-5] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS