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Started by upstream project "BIOFORMATS-test-repo" build number 39 originally caused by: Started by upstream project "Trigger" build number 45 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5192243565440905569.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5479_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:04:33,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:04:33,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:04:33,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:04:33,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:04:33,008 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:04:33,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:04:33,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:04:33,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:04:33,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:04:33,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:04:33,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:04:33,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:04:33,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:04:33,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:04:33,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:04:33,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:04:33,408 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:04:33,408 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:04:33,408 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:04:33,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:04:33,409 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:04:33,410 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:04:33,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 400 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-20 02:04:33,446] [main] java.version = 11.0.16 [testng] 02:04:33,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:04:33,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-20_02-04-33.log] [testng] 02:04:33,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-20 02:04:33,527] [main] testng.directory = /data [testng] [2024-04-20 02:04:33,528] [main] testng.configDirectory = /config [testng] [2024-04-20 02:04:33,577] [main] testng.multiplier = 1.0 [testng] [2024-04-20 02:04:33,579] [main] testng.in-memory = false [testng] [2024-04-20 02:04:33,579] [main] testng.allow-missing = false [testng] [2024-04-20 02:04:33,579] [main] user.language = en [testng] [2024-04-20 02:04:33,579] [main] user.country = ${user.country} [testng] [2024-04-20 02:04:33,579] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-20 02:04:34,394] [main] ---------------------------------------- [testng] [2024-04-20 02:04:34,394] [main] Total files: 19 [testng] [2024-04-20 02:04:34,394] [main] Scan time: 0.814 s (42 ms/file) [testng] [2024-04-20 02:04:34,395] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-20 02:04:35,725] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 02:04:35,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:04:35,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:35,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-20_02-04-35.log] [testng] 02:04:35,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18bde856 - End of configuration. [testng] [2024-04-20 02:04:35,756] [pool-1-thread-12] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 02:04:35,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:04:35,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:35,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-20_02-04-35.log] [testng] 02:04:35,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bd8b34 - End of configuration. [testng] [2024-04-20 02:04:35,830] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 02:04:35,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:04:35,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:35,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-20_02-04-35.log] [testng] 02:04:35,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504ca982 - End of configuration. [testng] [2024-04-20 02:04:35,859] [pool-1-thread-10] Initializing /data/samples/1600R PICT0005.MRW: [testng] 02:04:35,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:04:35,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:35,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-20_02-04-35.log] [testng] 02:04:35,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25af6311 - End of configuration. [testng] [2024-04-20 02:04:35,878] [pool-1-thread-9] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 02:04:35,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:04:35,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:35,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-20_02-04-35.log] [testng] 02:04:35,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3024f2d7 - End of configuration. [testng] [2024-04-20 02:04:35,903] [pool-1-thread-8] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:04:35,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:04:35,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:35,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-20_02-04-35.log] [testng] 02:04:35,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26fbf597 - End of configuration. [testng] [2024-04-20 02:04:35,943] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 02:04:35,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:04:35,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:35,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-20_02-04-35.log] [testng] 02:04:35,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cad97c2 - End of configuration. [testng] [2024-04-20 02:04:36,012] [pool-1-thread-6] Initializing /data/samples/800R PICT0010.MRW: [testng] 02:04:36,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:04:36,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:36,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-20_02-04-36.log] [testng] 02:04:36,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f780db - End of configuration. [testng] [2024-04-20 02:04:36,070] [pool-1-thread-5] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:04:36,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:04:36,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:36,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-20_02-04-36.log] [testng] 02:04:36,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bfbaf45 - End of configuration. [testng] [2024-04-20 02:04:36,090] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:04:36,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:04:36,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:36,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-20_02-04-36.log] [testng] 02:04:36,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21c48d20 - End of configuration. [testng] [2024-04-20 02:04:36,118] [pool-1-thread-3] Initializing /data/samples/100R PICT0001.MRW: [testng] 02:04:36,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:04:36,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:36,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-20_02-04-36.log] [testng] 02:04:36,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653f736d - End of configuration. [testng] [2024-04-20 02:04:36,166] [pool-1-thread-2] Initializing /data/samples/200R PICT0002.MRW: [testng] 02:04:36,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:04:36,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:36,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-20_02-04-36.log] [testng] 02:04:36,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60222b10 - End of configuration. [testng] [2024-04-20 02:04:42,766] [pool-1-thread-1] Initializing /data/samples/3200R PICT0006.MRW: [testng] [2024-04-20 02:04:42,779] [pool-1-thread-11] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2024-04-20 02:04:42,792] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-04-20 02:04:42,807] [pool-1-thread-12] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-04-20 02:04:42,827] [pool-1-thread-3] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-04-20 02:04:42,866] [pool-1-thread-5] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-04-20 02:04:42,890] [pool-1-thread-8] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS