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Started by upstream project "BIOFORMATS-test-repo" build number 345 originally caused by: Started by upstream project "Trigger" build number 371 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4534181825667975768.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_54961_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:13:54,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 03:13:54,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 03:13:54,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:13:54,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:13:54,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:13:54,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:13:54,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:13:54,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:13:54,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:13:54,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:13:54,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:13:54,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:13:54,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:13:54,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:13:54,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:13:54,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:13:54,666 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:13:54,666 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:13:54,666 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:13:54,666 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:13:54,666 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 03:13:54,667 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 03:13:54,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-14 03:13:54,677] [main] java.version = 1.8.0_342 [testng] 03:13:54,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:13:54,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:13:54,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-14_03-13-54.log] [testng] 03:13:54,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-02-14 03:13:54,727] [main] testng.directory = /data [testng] [2025-02-14 03:13:54,727] [main] testng.configDirectory = /config [testng] [2025-02-14 03:13:54,740] [main] testng.multiplier = 1.0 [testng] [2025-02-14 03:13:54,740] [main] testng.in-memory = false [testng] [2025-02-14 03:13:54,740] [main] testng.allow-missing = false [testng] [2025-02-14 03:13:54,740] [main] user.language = en [testng] [2025-02-14 03:13:54,740] [main] user.country = ${user.country} [testng] [2025-02-14 03:13:54,740] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-02-14 03:13:55,572] [main] ---------------------------------------- [testng] [2025-02-14 03:13:55,572] [main] Total files: 18 [testng] [2025-02-14 03:13:55,572] [main] Scan time: 0.832 s (46 ms/file) [testng] [2025-02-14 03:13:55,572] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-14 03:14:01,693] [pool-1-thread-1] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 03:14:01,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:14:01,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:01,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-14_03-14-01.log] [testng] 03:14:01,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed38dd3 - End of configuration. [testng] [2025-02-14 03:14:01,933] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 03:14:01,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:14:01,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:01,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-14_03-14-01.log] [testng] 03:14:01,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae25bd7 - End of configuration. [testng] [2025-02-14 03:14:02,190] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 03:14:02,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:14:02,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:02,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-14_03-14-02.log] [testng] 03:14:02,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b249f04 - End of configuration. [testng] [2025-02-14 03:14:02,428] [pool-1-thread-10] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 03:14:02,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:14:02,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:02,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-14_03-14-02.log] [testng] 03:14:02,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@350bea04 - End of configuration. [testng] [2025-02-14 03:14:02,681] [pool-1-thread-9] Initializing /data/simon/colour_separated_image.psd: [testng] 03:14:02,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:14:02,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:02,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-14_03-14-02.log] [testng] 03:14:02,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b975c30 - End of configuration. [testng] [2025-02-14 03:14:02,925] [pool-1-thread-8] Initializing /data/misc/vig_drawing_1.psd: [testng] 03:14:02,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:14:02,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:02,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-14_03-14-02.log] [testng] 03:14:02,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4417dba2 - End of configuration. [testng] [2025-02-14 03:14:03,166] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 03:14:03,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:14:03,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:03,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-14_03-14-03.log] [testng] 03:14:03,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32967efe - End of configuration. [testng] [2025-02-14 03:14:03,413] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd: [testng] 03:14:03,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:14:03,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:03,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-14_03-14-03.log] [testng] 03:14:03,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65e496b3 - End of configuration. [testng] [2025-02-14 03:14:03,673] [pool-1-thread-5] Initializing /data/big-images/8kx8k.psd: [testng] 03:14:03,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:14:03,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:03,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-14_03-14-03.log] [testng] 03:14:03,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@489b3e0e - End of configuration. [testng] [2025-02-14 03:14:03,927] [pool-1-thread-4] Initializing /data/misc/glossy_orbs.psd: [testng] 03:14:03,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:14:03,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:03,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-14_03-14-03.log] [testng] 03:14:03,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fec57a0 - End of configuration. [testng] [2025-02-14 03:14:04,162] [pool-1-thread-3] Initializing /data/ascb/423.psd: [testng] 03:14:04,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:14:04,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:04,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-14_03-14-04.log] [testng] 03:14:04,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d155c87 - End of configuration. [testng] [2025-02-14 03:14:04,423] [pool-1-thread-2] Initializing /data/misc/smilie.psd: [testng] 03:14:04,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:14:04,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:04,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-14_03-14-04.log] [testng] 03:14:04,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f76d5d5 - End of configuration. [testng] [2025-02-14 03:14:08,846] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] [2025-02-14 03:14:09,629] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-02-14 03:14:09,878] [pool-1-thread-2] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2025-02-14 03:14:10,132] [pool-1-thread-11] Initializing /data/ascb/607x.psd: [testng] [2025-02-14 03:14:10,404] [pool-1-thread-8] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2025-02-14 03:14:10,746] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS