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Started by upstream project "BIOFORMATS-test-repo" build number 39 originally caused by: Started by upstream project "Trigger" build number 45 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins16619953815947800410.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5534_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:34:50,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:34:50,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:34:51,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:34:51,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:34:51,023 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:34:51,023 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:34:51,023 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:34:51,023 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:34:51,024 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 02:34:51,024 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 02:34:51,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 464 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-20 02:34:51,035] [main] java.version = 11.0.16 [testng] 02:34:51,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:34:51,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:51,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-20_02-34-51.log] [testng] 02:34:51,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-20 02:34:51,288] [main] testng.directory = /data [testng] [2024-04-20 02:34:51,289] [main] testng.configDirectory = /config [testng] [2024-04-20 02:34:51,300] [main] testng.multiplier = 1.0 [testng] [2024-04-20 02:34:51,302] [main] testng.in-memory = false [testng] [2024-04-20 02:34:51,302] [main] testng.allow-missing = false [testng] [2024-04-20 02:34:51,302] [main] user.language = en [testng] [2024-04-20 02:34:51,302] [main] user.country = ${user.country} [testng] [2024-04-20 02:34:51,302] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-20 02:35:15,234] [main] ---------------------------------------- [testng] [2024-04-20 02:35:15,235] [main] Total files: 256 [testng] [2024-04-20 02:35:15,235] [main] Scan time: 23.931 s (93 ms/file) [testng] [2024-04-20 02:35:15,235] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-20 02:35:54,682] [pool-1-thread-1] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 02:35:54,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:35:54,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:54,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-20_02-35-54.log] [testng] 02:35:54,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798f289d - End of configuration. [testng] [2024-04-20 02:35:54,717] [pool-1-thread-12] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 02:35:54,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:35:54,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:54,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-20_02-35-54.log] [testng] 02:35:54,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b96a82 - End of configuration. [testng] [2024-04-20 02:35:58,589] [pool-1-thread-11] Initializing /data/clare/set_27_on_d.mtb: [testng] 02:35:58,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:35:58,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:58,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-20_02-35-58.log] [testng] 02:35:58,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc76895 - End of configuration. [testng] [2024-04-20 02:35:59,504] [pool-1-thread-10] Initializing /data/kees/Mariaelena_d.mtb: [testng] 02:35:59,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:35:59,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:59,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-20_02-35-59.log] [testng] 02:35:59,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d7e9844 - End of configuration. [testng] [2024-04-20 02:35:59,837] [pool-1-thread-9] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 02:35:59,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:35:59,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:59,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-20_02-35-59.log] [testng] 02:35:59,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5999e5b5 - End of configuration. [testng] [2024-04-20 02:35:59,904] [pool-1-thread-8] Initializing /data/viktorie/2Channels.tif: [testng] 02:35:59,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:35:59,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:59,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-20_02-35-59.log] [testng] 02:35:59,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3698ae89 - End of configuration. [testng] [2024-04-20 02:35:59,971] [pool-1-thread-7] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 02:35:59,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:35:59,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:59,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-20_02-35-59.log] [testng] 02:35:59,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37766cb9 - End of configuration. [testng] [2024-04-20 02:36:00,020] [pool-1-thread-6] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 02:36:00,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:36:00,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:00,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-20_02-36-00.log] [testng] 02:36:00,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@769309d - End of configuration. [testng] [2024-04-20 02:36:00,045] [pool-1-thread-5] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 02:36:00,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:36:00,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:00,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-20_02-36-00.log] [testng] 02:36:00,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@680571f0 - End of configuration. [testng] [2024-04-20 02:36:00,108] [pool-1-thread-4] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 02:36:00,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:36:00,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:00,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-20_02-36-00.log] [testng] 02:36:00,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5268b04f - End of configuration. [testng] [2024-04-20 02:36:00,309] [pool-1-thread-3] Initializing /data/viktorie/Structure.jpg: [testng] 02:36:00,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:36:00,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:00,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-20_02-36-00.log] [testng] 02:36:00,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c3e451 - End of configuration. [testng] [2024-04-20 02:36:00,358] [pool-1-thread-2] Initializing /data/viktorie/test/test_d.mtb: [testng] 02:36:00,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:36:00,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:00,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-20_02-36-00.log] [testng] 02:36:00,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ccafedc - End of configuration. [testng] [2024-04-20 02:36:03,439] [pool-1-thread-3] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 58 seconds Finished: SUCCESS