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Started by upstream project "BIOFORMATS-test-repo" build number 40 originally caused by: Started by upstream project "Trigger" build number 46 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins10442563537251680349.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5564_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:25,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:25,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:21:25,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:25,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:25,090 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:25,090 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:25,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:25,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:25,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:25,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:25,092 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:25,092 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:25,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:25,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:25,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:25,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:25,322 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:25,322 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:25,322 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:25,323 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:25,323 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:21:25,324 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:21:25,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 233 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-21 01:21:25,336] [main] java.version = 17.0.2 [testng] 01:21:25,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:25,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:25,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-21_01-21-25.log] [testng] 01:21:25,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-21 01:21:25,397] [main] testng.directory = /data [testng] [2024-04-21 01:21:25,397] [main] testng.configDirectory = /config [testng] [2024-04-21 01:21:25,408] [main] testng.multiplier = 1.0 [testng] [2024-04-21 01:21:25,409] [main] testng.in-memory = false [testng] [2024-04-21 01:21:25,409] [main] testng.allow-missing = false [testng] [2024-04-21 01:21:25,409] [main] user.language = en [testng] [2024-04-21 01:21:25,409] [main] user.country = ${user.country} [testng] [2024-04-21 01:21:25,409] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-21 01:21:26,470] [main] ---------------------------------------- [testng] [2024-04-21 01:21:26,470] [main] Total files: 21 [testng] [2024-04-21 01:21:26,471] [main] Scan time: 1.061 s (50 ms/file) [testng] [2024-04-21 01:21:26,471] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-21 01:21:28,679] [pool-1-thread-1] Initializing /data/stefan/001_q05.txt: [testng] 01:21:28,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:28,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:28,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-21_01-21-28.log] [testng] 01:21:28,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54e1cfb6 - End of configuration. [testng] [2024-04-21 01:21:28,721] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt: [testng] 01:21:28,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:28,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:28,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-21_01-21-28.log] [testng] 01:21:28,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ce0330 - End of configuration. [testng] [2024-04-21 01:21:28,769] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt: [testng] 01:21:28,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:28,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:28,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-21_01-21-28.log] [testng] 01:21:28,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522ef87 - End of configuration. [testng] [2024-04-21 01:21:28,804] [pool-1-thread-10] Initializing /data/stefan/001_q18.txt: [testng] 01:21:28,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:28,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:28,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-21_01-21-28.log] [testng] 01:21:28,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d7f4de9 - End of configuration. [testng] [2024-04-21 01:21:28,887] [pool-1-thread-9] Initializing /data/stefan/001_q11.txt: [testng] 01:21:28,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:28,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:28,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-21_01-21-28.log] [testng] 01:21:28,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@396cb0a7 - End of configuration. [testng] [2024-04-21 01:21:28,969] [pool-1-thread-8] Initializing /data/stefan/001_q10.txt: [testng] 01:21:28,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:28,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:28,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-21_01-21-28.log] [testng] 01:21:28,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df473a4 - End of configuration. [testng] [2024-04-21 01:21:29,047] [pool-1-thread-7] Initializing /data/stefan/001_q04.txt: [testng] 01:21:29,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:29,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-21_01-21-29.log] [testng] 01:21:29,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33ff6cfc - End of configuration. [testng] [2024-04-21 01:21:29,081] [pool-1-thread-6] Initializing /data/stefan/001_q13.txt: [testng] 01:21:29,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:29,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-21_01-21-29.log] [testng] 01:21:29,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a24aff - End of configuration. [testng] [2024-04-21 01:21:29,140] [pool-1-thread-5] Initializing /data/stefan/001_q01.txt: [testng] 01:21:29,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:29,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-21_01-21-29.log] [testng] 01:21:29,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cdf5884 - End of configuration. [testng] [2024-04-21 01:21:29,175] [pool-1-thread-4] Initializing /data/stefan/001_q12.txt: [testng] 01:21:29,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:29,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-21_01-21-29.log] [testng] 01:21:29,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ecf30c - End of configuration. [testng] [2024-04-21 01:21:29,300] [pool-1-thread-3] Initializing /data/stefan/001_q06.txt: [testng] 01:21:29,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:29,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-21_01-21-29.log] [testng] 01:21:29,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5efa9810 - End of configuration. [testng] [2024-04-21 01:21:29,340] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt: [testng] 01:21:29,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:29,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-21_01-21-29.log] [testng] 01:21:29,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d09324 - End of configuration. [testng] [2024-04-21 01:21:31,984] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt: [testng] [2024-04-21 01:21:32,068] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt: [testng] [2024-04-21 01:21:32,152] [pool-1-thread-6] Initializing /data/stefan/001_q16.txt: [testng] [2024-04-21 01:21:32,195] [pool-1-thread-5] Initializing /data/stefan/001_q09.txt: [testng] [2024-04-21 01:21:32,272] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt: [testng] [2024-04-21 01:21:32,360] [pool-1-thread-8] Initializing /data/stefan/001_q15.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS