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Started by upstream project "BIOFORMATS-test-repo" build number 40 originally caused by: Started by upstream project "Trigger" build number 46 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins11653139224320713647.sh + '[' targa = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5586_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:26:45,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:26:45,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:26:45,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:45,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:45,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:26:45,073 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:26:45,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:26:45,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:45,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:45,074 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:26:45,074 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:26:45,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:26:45,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:26:45,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:26:45,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:26:45,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:26:45,305 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:26:45,305 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:26:45,306 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:26:45,306 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:26:45,306 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:26:45,307 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:26:45,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-21 01:26:45,316] [main] java.version = 17.0.2 [testng] 01:26:45,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:26:45,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:45,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-21_01-26-45.log] [testng] 01:26:45,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-21 01:26:45,366] [main] testng.directory = /data [testng] [2024-04-21 01:26:45,367] [main] testng.configDirectory = /config [testng] [2024-04-21 01:26:45,381] [main] testng.multiplier = 1.0 [testng] [2024-04-21 01:26:45,383] [main] testng.in-memory = false [testng] [2024-04-21 01:26:45,383] [main] testng.allow-missing = false [testng] [2024-04-21 01:26:45,383] [main] user.language = en [testng] [2024-04-21 01:26:45,383] [main] user.country = ${user.country} [testng] [2024-04-21 01:26:45,384] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-21 01:26:45,807] [main] ---------------------------------------- [testng] [2024-04-21 01:26:45,807] [main] Total files: 21 [testng] [2024-04-21 01:26:45,807] [main] Scan time: 0.423 s (20 ms/file) [testng] [2024-04-21 01:26:45,807] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-21 01:26:46,604] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 01:26:46,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:46,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-21_01-26-46.log] [testng] 01:26:46,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@635c7634 - End of configuration. [testng] [2024-04-21 01:26:46,622] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA: [testng] 01:26:46,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:46,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-21_01-26-46.log] [testng] 01:26:46,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9ec837 - End of configuration. [testng] [2024-04-21 01:26:46,674] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: [testng] 01:26:46,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:46,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-21_01-26-46.log] [testng] 01:26:46,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d3ed0ee - End of configuration. [testng] [2024-04-21 01:26:46,687] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:26:46,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:46,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-21_01-26-46.log] [testng] 01:26:46,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d51f4c3 - End of configuration. [testng] [2024-04-21 01:26:46,705] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: [testng] 01:26:46,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:46,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-21_01-26-46.log] [testng] 01:26:46,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6535a1df - End of configuration. [testng] [2024-04-21 01:26:46,721] [pool-1-thread-8] Initializing /data/samples/UBW8.TGA: [testng] 01:26:46,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:46,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-21_01-26-46.log] [testng] 01:26:46,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6b1c4 - End of configuration. [testng] [2024-04-21 01:26:46,732] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA: [testng] 01:26:46,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:46,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-21_01-26-46.log] [testng] 01:26:46,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@881d484 - End of configuration. [testng] [2024-04-21 01:26:46,752] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA: [testng] 01:26:46,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:46,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-21_01-26-46.log] [testng] 01:26:46,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3254f22f - End of configuration. [testng] [2024-04-21 01:26:46,764] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 01:26:46,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:46,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-21_01-26-46.log] [testng] 01:26:46,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22034798 - End of configuration. [testng] [2024-04-21 01:26:46,774] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:26:46,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:46,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-21_01-26-46.log] [testng] 01:26:46,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fdce4b4 - End of configuration. [testng] [2024-04-21 01:26:46,786] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA: [testng] 01:26:46,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:46,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-21_01-26-46.log] [testng] 01:26:46,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6732c003 - End of configuration. [testng] [2024-04-21 01:26:46,801] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 01:26:46,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:46,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-21_01-26-46.log] [testng] 01:26:46,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31caf268 - End of configuration. [testng] [2024-04-21 01:26:48,355] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] [2024-04-21 01:26:48,362] [pool-1-thread-11] Initializing /data/samples/UTC24.TGA: [testng] [2024-04-21 01:26:48,369] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] [2024-04-21 01:26:48,378] [pool-1-thread-1] Initializing /data/samples/FLAG_B32.TGA: [testng] [2024-04-21 01:26:48,387] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] [2024-04-21 01:26:48,395] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA: [testng] [2024-04-21 01:26:48,402] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-04-21 01:26:48,411] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] [2024-04-21 01:26:48,421] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS