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Started by upstream project "BIOFORMATS-test-repo" build number 354
originally caused by:
 Started by upstream project "Trigger" build number 380
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15150630035500583927.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_56456_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 03:44:05,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 03:44:05,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
   [testng] 03:44:05,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:44:05,640 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:44:05,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:44:05,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:44:05,642 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:44:05,642 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:44:05,642 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:44:05,643 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:44:05,643 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:44:05,643 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:44:05,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:44:05,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:44:05,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:44:05,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:44:05,844 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:44:05,844 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:44:05,844 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:44:05,844 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:44:05,845 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
   [testng] 03:44:05,846 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
   [testng] 03:44:05,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-02-22 03:44:05,854] [main] java.version = 11.0.16
   [testng] 03:44:05,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:44:05,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:44:05,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-22_03-44-05.log]
   [testng] 03:44:05,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
   [testng] [2025-02-22 03:44:05,904] [main] testng.directory = /data
   [testng] [2025-02-22 03:44:05,904] [main] testng.configDirectory = /config
   [testng] [2025-02-22 03:44:05,914] [main] testng.multiplier = 1.0
   [testng] [2025-02-22 03:44:05,915] [main] testng.in-memory = false
   [testng] [2025-02-22 03:44:05,915] [main] testng.allow-missing = false
   [testng] [2025-02-22 03:44:05,915] [main] user.language = en
   [testng] [2025-02-22 03:44:05,915] [main] user.country = ${user.country}
   [testng] [2025-02-22 03:44:05,916] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-02-22 03:44:17,815] [main] ----------------------------------------
   [testng] [2025-02-22 03:44:17,815] [main] Total files: 944
   [testng] [2025-02-22 03:44:17,816] [main] Scan time: 11.899 s (12 ms/file)
   [testng] [2025-02-22 03:44:17,816] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-02-22 03:45:42,249] [pool-1-thread-1] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 03:45:42,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:45:42,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:45:42,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-22_03-45-42.log]
   [testng] 03:45:42,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@266b27e0 - End of configuration.
   [testng] [2025-02-22 03:45:43,471] [pool-1-thread-12] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] 03:45:43,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:45:43,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:45:43,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-22_03-45-43.log]
   [testng] 03:45:43,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a50b1d - End of configuration.
   [testng] [2025-02-22 03:46:30,368] [pool-1-thread-11] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 03:46:30,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:46:30,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:30,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-22_03-46-30.log]
   [testng] 03:46:30,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e9abce8 - End of configuration.
   [testng] [2025-02-22 03:46:31,694] [pool-1-thread-10] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 03:46:31,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:46:31,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:31,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-22_03-46-31.log]
   [testng] 03:46:31,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6426f5 - End of configuration.
   [testng] [2025-02-22 03:46:32,857] [pool-1-thread-9] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 03:46:32,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:46:32,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:32,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-22_03-46-32.log]
   [testng] 03:46:32,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@257d3f6c - End of configuration.
   [testng] [2025-02-22 03:46:34,201] [pool-1-thread-8] Initializing /data/brian/Series002_z01.tif: 
   [testng] 03:46:34,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:46:34,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:34,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-22_03-46-34.log]
   [testng] 03:46:34,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129d6717 - End of configuration.
   [testng] [2025-02-22 03:46:35,969] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 03:46:35,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:46:35,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:35,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-22_03-46-35.log]
   [testng] 03:46:35,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11cbf2cf - End of configuration.
   [testng] [2025-02-22 03:46:37,123] [pool-1-thread-6] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 03:46:37,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:46:37,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:37,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-22_03-46-37.log]
   [testng] 03:46:37,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d366103 - End of configuration.
   [testng] [2025-02-22 03:46:38,314] [pool-1-thread-5] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] 03:46:38,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:46:38,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:38,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-22_03-46-38.log]
   [testng] 03:46:38,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7535a7bd - End of configuration.
   [testng] [2025-02-22 03:46:39,643] [pool-1-thread-4] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 03:46:39,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:46:39,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:39,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-22_03-46-39.log]
   [testng] 03:46:39,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf84cfd - End of configuration.
   [testng] [2025-02-22 03:46:41,241] [pool-1-thread-3] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 03:46:41,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:46:41,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:41,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-22_03-46-41.log]
   [testng] 03:46:41,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3165a786 - End of configuration.
   [testng] [2025-02-22 03:46:42,308] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 03:46:42,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:46:42,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:46:42,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-22_03-46-42.log]
   [testng] 03:46:42,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f2d8d2e - End of configuration.
   [testng] [2025-02-22 03:46:51,427] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] [2025-02-22 03:46:55,230] [pool-1-thread-8] Initializing /data/primate/Leica_Image.tif: 
   [testng] [2025-02-22 03:46:56,590] [pool-1-thread-10] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 04:47:44,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:47:44,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:47:44,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-22_04-47-44.log]
   [testng] 04:47:44,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d157493 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 63 minutes 43 seconds
Finished: SUCCESS