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Started by upstream project "BIOFORMATS-test-repo" build number 355 originally caused by: Started by upstream project "Trigger" build number 381 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13469479175005358058.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_56494_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:26:35,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:26:35,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:26:35,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:35,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:35,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:26:35,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:26:35,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:26:35,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:35,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:35,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:26:35,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:26:35,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:26:35,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:26:35,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:26:35,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:26:35,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:26:35,543 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:26:35,543 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:26:35,543 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:26:35,544 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:26:35,544 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:26:35,544 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:26:35,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-23 00:26:35,554] [main] java.version = 17.0.2 [testng] 00:26:35,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:26:35,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:35,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-23_00-26-35.log] [testng] 00:26:35,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-02-23 00:26:35,604] [main] testng.directory = /data [testng] [2025-02-23 00:26:35,604] [main] testng.configDirectory = /config [testng] [2025-02-23 00:26:35,613] [main] testng.multiplier = 1.0 [testng] [2025-02-23 00:26:35,614] [main] testng.in-memory = false [testng] [2025-02-23 00:26:35,614] [main] testng.allow-missing = false [testng] [2025-02-23 00:26:35,614] [main] user.language = en [testng] [2025-02-23 00:26:35,614] [main] user.country = ${user.country} [testng] [2025-02-23 00:26:35,614] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-23 00:26:53,320] [main] ---------------------------------------- [testng] [2025-02-23 00:26:53,320] [main] Total files: 21 [testng] [2025-02-23 00:26:53,320] [main] Scan time: 17.705 s (843 ms/file) [testng] [2025-02-23 00:26:53,320] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-23 00:27:14,241] [pool-1-thread-1] Initializing /data/stefan/001_q06.txt: [testng] 00:27:14,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:27:14,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:14,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-23_00-27-14.log] [testng] 00:27:14,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33131035 - End of configuration. [testng] [2025-02-23 00:27:15,064] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt: [testng] 00:27:15,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:27:15,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:15,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-23_00-27-15.log] [testng] 00:27:15,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a59f07 - End of configuration. [testng] [2025-02-23 00:27:16,596] [pool-1-thread-11] Initializing /data/stefan/001_q18.txt: [testng] 00:27:16,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:27:16,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:16,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-23_00-27-16.log] [testng] 00:27:16,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@572bfd3c - End of configuration. [testng] [2025-02-23 00:27:17,474] [pool-1-thread-10] Initializing /data/stefan/001_q09.txt: [testng] 00:27:17,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:27:17,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:17,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-23_00-27-17.log] [testng] 00:27:17,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ea34b5 - End of configuration. [testng] [2025-02-23 00:27:18,982] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] 00:27:18,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:27:18,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:18,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-23_00-27-18.log] [testng] 00:27:18,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1455eee2 - End of configuration. [testng] [2025-02-23 00:27:20,504] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] 00:27:20,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:27:20,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:20,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-23_00-27-20.log] [testng] 00:27:20,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6b6015 - End of configuration. [testng] [2025-02-23 00:27:21,372] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 00:27:21,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:27:21,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:21,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-23_00-27-21.log] [testng] 00:27:21,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff6aef3 - End of configuration. [testng] [2025-02-23 00:27:22,214] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt: [testng] 00:27:22,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:27:22,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:22,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-23_00-27-22.log] [testng] 00:27:22,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1549d - End of configuration. [testng] [2025-02-23 00:27:23,109] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 00:27:23,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:27:23,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:23,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-23_00-27-23.log] [testng] 00:27:23,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cfb85de - End of configuration. [testng] [2025-02-23 00:27:23,962] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt: [testng] 00:27:23,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:27:23,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:23,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-23_00-27-23.log] [testng] 00:27:23,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ca8e4f0 - End of configuration. [testng] [2025-02-23 00:27:24,799] [pool-1-thread-3] Initializing /data/stefan/001_q05.txt: [testng] 00:27:24,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:27:24,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:24,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-23_00-27-24.log] [testng] 00:27:24,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d4a7ba0 - End of configuration. [testng] [2025-02-23 00:27:25,735] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt: [testng] 00:27:25,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:27:25,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:25,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-23_00-27-25.log] [testng] 00:27:25,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10235c4 - End of configuration. [testng] [2025-02-23 00:27:44,474] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt: [testng] [2025-02-23 00:27:45,706] [pool-1-thread-4] Initializing /data/stefan/001_q15.txt: [testng] [2025-02-23 00:27:46,894] [pool-1-thread-7] Initializing /data/stefan/001_q10.txt: [testng] [2025-02-23 00:27:48,779] [pool-1-thread-1] Initializing /data/stefan/001_q11.txt: [testng] [2025-02-23 00:27:50,699] [pool-1-thread-5] Initializing /data/stefan/001_q04.txt: [testng] [2025-02-23 00:27:51,564] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 33 seconds Finished: SUCCESS