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Started by upstream project "BIOFORMATS-test-repo" build number 355 originally caused by: Started by upstream project "Trigger" build number 381 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins2637347458100063080.sh + '[' pict = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_56529_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:47:32,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:47:32,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:47:32,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:32,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:32,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:47:32,408 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:47:32,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:47:32,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:32,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:32,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:47:32,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:47:32,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:47:32,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:47:32,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:47:32,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:47:32,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:47:32,601 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:47:32,601 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:47:32,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:47:32,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:47:32,602 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:47:32,603 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:47:32,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-23 00:47:32,611] [main] java.version = 17.0.2 [testng] 00:47:32,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:47:32,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:32,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-23_00-47-32.log] [testng] 00:47:32,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-02-23 00:47:32,665] [main] testng.directory = /data [testng] [2025-02-23 00:47:32,666] [main] testng.configDirectory = /config [testng] [2025-02-23 00:47:32,675] [main] testng.multiplier = 1.0 [testng] [2025-02-23 00:47:32,676] [main] testng.in-memory = false [testng] [2025-02-23 00:47:32,676] [main] testng.allow-missing = false [testng] [2025-02-23 00:47:32,676] [main] user.language = en [testng] [2025-02-23 00:47:32,677] [main] user.country = ${user.country} [testng] [2025-02-23 00:47:32,677] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-23 00:47:33,288] [main] ---------------------------------------- [testng] [2025-02-23 00:47:33,288] [main] Total files: 25 [testng] [2025-02-23 00:47:33,289] [main] Scan time: 0.611 s (24 ms/file) [testng] [2025-02-23 00:47:33,289] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-23 00:47:37,591] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 00:47:37,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:47:37,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-23_00-47-37.log] [testng] 00:47:37,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ea9a76 - End of configuration. [testng] [2025-02-23 00:47:37,718] [pool-1-thread-12] Initializing /data/jqd/sixteenBit.pict: [testng] 00:47:37,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:47:37,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-23_00-47-37.log] [testng] 00:47:37,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9d771a - End of configuration. [testng] [2025-02-23 00:47:37,839] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] 00:47:37,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:47:37,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-23_00-47-37.log] [testng] 00:47:37,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11bee2d3 - End of configuration. [testng] [2025-02-23 00:47:37,966] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:47:37,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:47:37,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-23_00-47-37.log] [testng] 00:47:37,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d6a3b1 - End of configuration. [testng] [2025-02-23 00:47:38,103] [pool-1-thread-9] Initializing /data/misc/planet.pict: [testng] 00:47:38,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:47:38,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-23_00-47-38.log] [testng] 00:47:38,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67439091 - End of configuration. [testng] [2025-02-23 00:47:38,234] [pool-1-thread-8] Initializing /data/jqd/mire32.pict: [testng] 00:47:38,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:47:38,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-23_00-47-38.log] [testng] 00:47:38,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b475107 - End of configuration. [testng] [2025-02-23 00:47:38,347] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 00:47:38,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:47:38,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-23_00-47-38.log] [testng] 00:47:38,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40418caf - End of configuration. [testng] [2025-02-23 00:47:38,461] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:47:38,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:47:38,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-23_00-47-38.log] [testng] 00:47:38,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@471c79dd - End of configuration. [testng] [2025-02-23 00:47:38,571] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:47:38,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:47:38,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-23_00-47-38.log] [testng] 00:47:38,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@123aff00 - End of configuration. [testng] [2025-02-23 00:47:38,678] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:47:38,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:47:38,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-23_00-47-38.log] [testng] 00:47:38,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bae4230 - End of configuration. [testng] [2025-02-23 00:47:38,935] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 00:47:38,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:47:38,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-23_00-47-38.log] [testng] 00:47:38,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49007360 - End of configuration. [testng] [2025-02-23 00:47:39,040] [pool-1-thread-2] Initializing /data/misc/planet.png: [testng] 00:47:39,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:47:39,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:39,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-23_00-47-39.log] [testng] 00:47:39,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@207ef590 - End of configuration. [testng] [2025-02-23 00:47:40,807] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] [2025-02-23 00:47:41,231] [pool-1-thread-5] Initializing /data/brian/images/RED.PCT: [testng] [2025-02-23 00:47:41,442] [pool-1-thread-8] Initializing /data/brian/images/VENUS.pct: [testng] [2025-02-23 00:47:41,816] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2025-02-23 00:47:41,923] [pool-1-thread-9] Initializing /data/brian/images/BLK.PCT: [testng] [2025-02-23 00:47:42,029] [pool-1-thread-1] Initializing /data/brian/images/GRN.PCT: [testng] [2025-02-23 00:47:42,131] [pool-1-thread-12] Initializing /data/misc/planet2.pict: [testng] [2025-02-23 00:47:42,239] [pool-1-thread-11] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-02-23 00:47:42,348] [pool-1-thread-3] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2025-02-23 00:47:42,511] [pool-1-thread-10] Initializing /data/brian/images/BLU.PCT: [testng] [2025-02-23 00:47:42,783] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2025-02-23 00:47:43,782] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] [2025-02-23 00:47:43,917] [pool-1-thread-2] Initializing /data/jqd/32bit.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS