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Started by upstream project "BIOFORMATS-test-repo" build number 40 originally caused by: Started by upstream project "Trigger" build number 46 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14686952482206173224.sh + '[' scanr = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5674_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:17:11,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:17:11,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:17:11,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:17:11,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:17:11,938 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:17:11,938 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:17:11,939 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:17:11,939 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:17:11,939 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:17:11,941 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:17:11,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 442 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-21 02:17:11,954] [main] java.version = 17.0.2 [testng] 02:17:11,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:17:11,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-21_02-17-11.log] [testng] 02:17:12,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-21 02:17:12,035] [main] testng.directory = /data [testng] [2024-04-21 02:17:12,036] [main] testng.configDirectory = /config [testng] [2024-04-21 02:17:12,086] [main] testng.multiplier = 1.0 [testng] [2024-04-21 02:17:12,087] [main] testng.in-memory = false [testng] [2024-04-21 02:17:12,088] [main] testng.allow-missing = false [testng] [2024-04-21 02:17:12,088] [main] user.language = en [testng] [2024-04-21 02:17:12,088] [main] user.country = ${user.country} [testng] [2024-04-21 02:17:12,088] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-21 02:22:19,961] [main] ---------------------------------------- [testng] [2024-04-21 02:22:19,961] [main] Total files: 2169 [testng] [2024-04-21 02:22:19,961] [main] Scan time: 307.873 s (141 ms/file) [testng] [2024-04-21 02:22:19,961] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-21 02:39:32,752] [pool-1-thread-1] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: [testng] 02:39:32,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:39:32,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:32,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-21_02-39-32.log] [testng] 02:39:32,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fca152a - End of configuration. [testng] [2024-04-21 02:39:33,046] [pool-1-thread-12] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: [testng] 02:39:33,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:39:33,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:33,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-21_02-39-33.log] [testng] 02:39:33,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd2599e - End of configuration. [testng] [2024-04-21 02:41:03,303] [pool-1-thread-11] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: [testng] 02:41:03,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:41:03,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:03,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-21_02-41-03.log] [testng] 02:41:03,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3183b0f4 - End of configuration. [testng] [2024-04-21 02:41:04,235] [pool-1-thread-10] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: [testng] 02:41:04,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:41:04,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:04,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-21_02-41-04.log] [testng] 02:41:04,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47127 - End of configuration. [testng] [2024-04-21 02:41:06,803] [pool-1-thread-9] Initializing /data/juergen/Experiment/experiment_descriptor.xml: [testng] 02:41:06,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:41:06,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:06,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-21_02-41-06.log] [testng] 02:41:06,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@564cfb2a - End of configuration. [testng] [2024-04-21 02:41:07,029] [pool-1-thread-8] Initializing /data/nadine/experiment_descriptor.xml: [testng] 02:41:07,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:41:07,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:07,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-21_02-41-07.log] [testng] 02:41:07,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc24ef9 - End of configuration. [testng] [2024-04-21 02:41:07,444] [pool-1-thread-7] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: [testng] 02:41:07,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:41:07,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:07,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-21_02-41-07.log] [testng] 02:41:07,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ef9df7 - End of configuration. [testng] [2024-04-21 02:42:43,526] [pool-1-thread-6] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: [testng] 02:42:43,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:42:43,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:43,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-21_02-42-43.log] [testng] 02:42:43,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3206a7c8 - End of configuration. [testng] [2024-04-21 02:43:45,238] [pool-1-thread-5] Initializing /data/gideon/experiment_descriptor.xml: [testng] 02:43:45,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:43:45,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:43:45,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-21_02-43-45.log] [testng] 02:43:45,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22ebec66 - End of configuration. [testng] [2024-04-21 02:44:14,890] [pool-1-thread-4] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: [testng] 02:44:14,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:44:14,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:14,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-21_02-44-14.log] [testng] 02:44:14,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2daa70fe - End of configuration. [testng] [2024-04-21 02:44:44,365] [pool-1-thread-3] Initializing /data/christian/example/experiment_descriptor.xml: [testng] 02:44:44,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:44:44,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:44,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-21_02-44-44.log] [testng] 02:44:44,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50532262 - End of configuration. [testng] [2024-04-21 02:44:44,492] [pool-1-thread-2] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: [testng] 02:44:44,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:44:44,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:44,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-21_02-44-44.log] [testng] 02:44:44,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5827249a - End of configuration. [testng] [2024-04-21 02:48:17,213] [pool-1-thread-3] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: [testng] [2024-04-21 02:48:34,871] [pool-1-thread-9] Initializing /data/embl/Maik_001/experiment_descriptor.xml: [testng] [2024-04-21 02:48:44,882] [pool-1-thread-8] Initializing /data/ruben/plate_002/experiment_descriptor.xml: [testng] [2024-04-21 02:48:49,205] [pool-1-thread-1] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: [testng] [2024-04-21 02:50:09,618] [pool-1-thread-8] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 41 minutes 16 seconds Finished: SUCCESS