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Started by upstream project "BIOFORMATS-test-repo" build number 356 originally caused by: Started by upstream project "Trigger" build number 382 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15101164827327826954.sh + '[' obf = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_56795_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:04:52,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 04:04:52,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 04:04:52,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:04:52,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:04:52,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:04:52,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:04:52,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:04:52,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:04:52,108 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:04:52,108 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:04:52,108 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:04:52,108 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:04:52,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:04:52,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:04:52,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:04:52,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:04:52,397 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:04:52,397 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:04:52,397 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:04:52,398 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:04:52,398 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 04:04:52,399 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 04:04:52,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-24 04:04:52,409] [main] java.version = 1.8.0_342 [testng] 04:04:52,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:04:52,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:52,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-24_04-04-52.log] [testng] 04:04:52,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-02-24 04:04:52,464] [main] testng.directory = /data [testng] [2025-02-24 04:04:52,464] [main] testng.configDirectory = /config [testng] [2025-02-24 04:04:52,478] [main] testng.multiplier = 1.0 [testng] [2025-02-24 04:04:52,478] [main] testng.in-memory = false [testng] [2025-02-24 04:04:52,478] [main] testng.allow-missing = false [testng] [2025-02-24 04:04:52,478] [main] user.language = fr [testng] [2025-02-24 04:04:52,478] [main] user.country = FR [testng] [2025-02-24 04:04:52,478] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-02-24 04:05:07,310] [main] ---------------------------------------- [testng] [2025-02-24 04:05:07,310] [main] Total files: 12 [testng] [2025-02-24 04:05:07,310] [main] Scan time: 14.832 s (1236 ms/file) [testng] [2025-02-24 04:05:07,310] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-24 04:05:25,059] [pool-1-thread-1] Initializing /data/qa-27923/test.obf: [testng] 04:05:25,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:05:25,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:25,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-24_04-05-25.log] [testng] 04:05:25,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31869be1 - End of configuration. [testng] [2025-02-24 04:05:26,310] [pool-1-thread-11] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr: [testng] 04:05:26,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:05:26,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:26,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-24_04-05-26.log] [testng] 04:05:26,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@729ec773 - End of configuration. [testng] [2025-02-24 04:05:27,527] [pool-1-thread-10] Initializing /data/bjoernthiel/20191106__zstack.msr: [testng] 04:05:27,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:05:27,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:27,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-24_04-05-27.log] [testng] 04:05:27,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3979d2b8 - End of configuration. [testng] [2025-02-24 04:05:28,794] [pool-1-thread-9] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf: [testng] 04:05:28,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:05:28,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:28,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-24_04-05-28.log] [testng] 04:05:28,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@697fa628 - End of configuration. [testng] [2025-02-24 04:05:30,422] [pool-1-thread-8] Initializing /data/qa-16895/Measurement1.msr: [testng] 04:05:30,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:05:30,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:30,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-24_04-05-30.log] [testng] 04:05:30,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76398291 - End of configuration. [testng] [2025-02-24 04:05:31,623] [pool-1-thread-7] Initializing /data/public/ngladitz/v6/test-v6.obf: [testng] 04:05:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:05:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:31,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-24_04-05-31.log] [testng] 04:05:31,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eaffaef - End of configuration. [testng] [2025-02-24 04:05:33,046] [pool-1-thread-6] Initializing /data/public/ngladitz/v4/test-v4.obf: [testng] 04:05:33,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:05:33,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:33,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-24_04-05-33.log] [testng] 04:05:33,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5d8ca5 - End of configuration. [testng] [2025-02-24 04:05:34,312] [pool-1-thread-5] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr: [testng] 04:05:34,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:05:34,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:34,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-24_04-05-34.log] [testng] 04:05:34,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@675928c4 - End of configuration. [testng] [2025-02-24 04:05:35,502] [pool-1-thread-4] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf: [testng] 04:05:35,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:05:35,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:35,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-24_04-05-35.log] [testng] 04:05:35,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19ba6a41 - End of configuration. [testng] [2025-02-24 04:05:36,706] [pool-1-thread-3] Initializing /data/qa-17111/before 1.msr: [testng] 04:05:36,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:05:36,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:36,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-24_04-05-36.log] [testng] 04:05:36,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ce9f829 - End of configuration. [testng] [2025-02-24 04:05:38,659] [pool-1-thread-2] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf: [testng] 04:05:38,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:05:38,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:05:38,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-24_04-05-38.log] [testng] 04:05:38,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ac012db - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 24 seconds Finished: SUCCESS