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Started by upstream project "BIOFORMATS-test-repo" build number 357 originally caused by: Started by upstream project "Trigger" build number 383 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15194351915878947399.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_56893_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:45:38,483 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:45:38,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 01:45:38,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:38,486 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:38,487 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:45:38,488 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:45:38,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:45:38,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:38,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:38,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:45:38,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:45:38,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:45:38,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:45:38,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:45:38,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:45:38,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:45:38,722 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:45:38,723 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:45:38,723 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:45:38,723 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:45:38,723 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 01:45:38,724 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 01:45:38,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 236 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-25 01:45:38,734] [main] java.version = 11.0.16 [testng] 01:45:38,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:45:38,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:38,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-25_01-45-38.log] [testng] 01:45:38,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-02-25 01:45:38,788] [main] testng.directory = /data [testng] [2025-02-25 01:45:38,788] [main] testng.configDirectory = /config [testng] [2025-02-25 01:45:38,799] [main] testng.multiplier = 1.0 [testng] [2025-02-25 01:45:38,801] [main] testng.in-memory = false [testng] [2025-02-25 01:45:38,801] [main] testng.allow-missing = false [testng] [2025-02-25 01:45:38,801] [main] user.language = en [testng] [2025-02-25 01:45:38,801] [main] user.country = ${user.country} [testng] [2025-02-25 01:45:38,801] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-25 02:00:03,043] [main] ---------------------------------------- [testng] [2025-02-25 02:00:03,043] [main] Total files: 14121 [testng] [2025-02-25 02:00:03,044] [main] Scan time: 864.242 s (61 ms/file) [testng] [2025-02-25 02:00:03,044] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-25 02:19:21,094] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 02:19:21,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:19:21,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:21,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-25_02-19-21.log] [testng] 02:19:21,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48c22289 - End of configuration. [testng] [2025-02-25 02:19:25,995] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 02:19:25,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:19:25,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:25,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-25_02-19-25.log] [testng] 02:19:25,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1446cb58 - End of configuration. [testng] [2025-02-25 02:19:26,871] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] 02:19:26,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:19:26,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:26,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-25_02-19-26.log] [testng] 02:19:26,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ac2e07 - End of configuration. [testng] [2025-02-25 02:19:32,092] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 02:19:32,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:19:32,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:32,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-25_02-19-32.log] [testng] 02:19:32,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53fd0a47 - End of configuration. [testng] [2025-02-25 02:19:32,936] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 02:19:32,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:19:32,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:32,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-25_02-19-32.log] [testng] 02:19:32,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bafc0cc - End of configuration. [testng] [2025-02-25 02:19:35,219] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] 02:19:35,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:19:35,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:35,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-25_02-19-35.log] [testng] 02:19:35,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11049f6e - End of configuration. [testng] [2025-02-25 02:19:35,808] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 02:19:35,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:19:35,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:35,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-25_02-19-35.log] [testng] 02:19:35,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d239f5b - End of configuration. [testng] [2025-02-25 02:19:36,432] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] 02:19:36,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:19:36,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:36,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-25_02-19-36.log] [testng] 02:19:36,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b76169 - End of configuration. [testng] [2025-02-25 02:19:37,483] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:19:37,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:19:37,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:37,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-25_02-19-37.log] [testng] 02:19:37,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b3a5862 - End of configuration. [testng] [2025-02-25 02:19:38,292] [pool-1-thread-5] Used files list does not include base file [testng] [2025-02-25 02:19:38,294] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 02:19:38,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:19:38,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:38,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-25_02-19-38.log] [testng] 02:19:38,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a9f803d - End of configuration. [testng] [2025-02-25 02:19:39,098] [pool-1-thread-4] Used files list does not include base file [testng] [2025-02-25 02:19:39,101] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 02:19:39,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:19:39,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:39,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-25_02-19-39.log] [testng] 02:19:39,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba020f1 - End of configuration. [testng] [2025-02-25 02:19:39,678] [pool-1-thread-3] Used files list does not include base file [testng] [2025-02-25 02:19:39,680] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:19:39,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:19:39,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:39,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-25_02-19-39.log] [testng] 02:19:39,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c52c00 - End of configuration. [testng] [2025-02-25 02:19:45,486] [pool-1-thread-2] Initializing /data/samples/zserEight.stk: [testng] [2025-02-25 02:19:47,678] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2025-02-25 02:19:51,056] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-02-25 02:19:51,952] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-02-25 02:19:52,898] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-02-25 02:19:54,118] [pool-1-thread-2] Used files list does not include base file [testng] [2025-02-25 02:19:56,590] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-02-25 02:19:57,512] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:19:59,657] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2025-02-25 02:20:02,933] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-02-25 02:20:11,316] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2025-02-25 02:20:12,349] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-02-25 02:20:13,502] [pool-1-thread-9] Used files list does not include base file [testng] [2025-02-25 02:20:13,522] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-02-25 02:20:19,475] [pool-1-thread-7] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-02-25 02:20:20,329] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-02-25 02:20:23,816] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:20:28,483] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-02-25 02:20:29,751] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2025-02-25 02:20:32,438] [pool-1-thread-5] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-02-25 02:20:46,500] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-02-25 02:20:47,383] [pool-1-thread-4] Used files list does not include base file [testng] [2025-02-25 02:20:51,506] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-02-25 02:20:52,856] [pool-1-thread-8] Used files list does not include base file [testng] [2025-02-25 02:20:53,876] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-02-25 02:20:55,787] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2025-02-25 02:20:58,946] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-02-25 02:21:01,689] [pool-1-thread-11] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-02-25 02:21:03,377] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-02-25 02:21:09,787] [pool-1-thread-7] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-02-25 02:21:21,124] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:21:25,709] [pool-1-thread-9] Initializing 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[pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-02-25 02:28:11,096] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2025-02-25 02:28:17,252] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2025-02-25 02:29:05,621] [pool-1-thread-11] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2025-02-25 02:29:13,942] [pool-1-thread-11] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-02-25 02:29:31,489] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-02-25 02:29:42,406] [pool-1-thread-11] Initializing /data/josh/2101to600e.stk: [testng] [2025-02-25 02:29:58,324] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-02-25 02:30:29,140] [pool-1-thread-11] Initializing 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[pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-02-25 02:39:15,357] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-02-25 02:39:17,773] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2025-02-25 02:39:25,948] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-02-25 02:39:36,631] [pool-1-thread-1] Initializing /data/cumol-test-series/23.001: [testng] [2025-02-25 02:40:08,484] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-02-25 02:40:09,553] [pool-1-thread-1] Used files list does not include base file [testng] [2025-02-25 02:40:18,779] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-02-25 02:40:46,599] [pool-1-thread-1] 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[pool-1-thread-12] Used files list does not include base file [testng] [2025-02-25 02:43:40,650] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:43:42,087] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:43:47,560] [pool-1-thread-12] Initializing /data/samples/zseries.stk: [testng] [2025-02-25 02:43:50,975] [pool-1-thread-4] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-02-25 02:43:52,204] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2025-02-25 02:43:53,755] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2025-02-25 02:43:59,563] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-02-25 02:44:02,621] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-02-25 02:44:05,209] [pool-1-thread-4] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-02-25 02:44:09,535] [pool-1-thread-4] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-02-25 02:44:13,242] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-02-25 02:44:14,517] [pool-1-thread-11] Used files list does not include base file [testng] [2025-02-25 02:44:15,218] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-02-25 02:44:16,293] [pool-1-thread-12] Used files list does not include base file [testng] [2025-02-25 02:44:16,870] [pool-1-thread-4] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-02-25 02:44:24,084] [pool-1-thread-4] Initializing /data/josh/2101to800.stk: [testng] [2025-02-25 02:44:29,720] [pool-1-thread-8] Initializing 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02:47:12,556] [pool-1-thread-10] Used files list does not include base file [testng] [2025-02-25 02:47:44,719] [pool-1-thread-10] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2025-02-25 02:47:47,247] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2025-02-25 02:47:49,448] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish4_w1FRET_t1.TIF: [testng] [2025-02-25 02:47:56,058] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR5_ISOto5HT_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-02-25 02:48:23,317] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2025-02-25 02:48:24,016] [pool-1-thread-4] Initializing /data/qa-16887/m-01.tif: [testng] [2025-02-25 02:48:31,063] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2025-02-25 02:48:33,953] [pool-1-thread-12] 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[pool-1-thread-12] Used files list does not include base file [testng] [2025-02-25 02:48:54,197] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2025-02-25 02:49:02,250] [pool-1-thread-7] Initializing /data/qa-16915/m-04-561.tif: [testng] [2025-02-25 02:49:08,313] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:49:20,242] [pool-1-thread-12] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2025-02-25 02:49:25,620] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:49:29,161] [pool-1-thread-12] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2025-02-25 02:49:33,476] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] 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[2025-02-25 02:52:54,895] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2025-02-25 02:52:58,526] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2025-02-25 02:53:02,362] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:53:08,374] [pool-1-thread-9] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2025-02-25 02:53:14,272] [pool-1-thread-9] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2025-02-25 02:53:25,326] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish1(ISO200nM)_w1FRET_s1_t1.TIF: [testng] [2025-02-25 02:53:35,830] [pool-1-thread-12] Initializing /data/aaron/metamorph.stk: [testng] [2025-02-25 02:53:38,638] [pool-1-thread-4] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2025-02-25 02:53:40,902] [pool-1-thread-12] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-02-25 02:53:43,845] [pool-1-thread-10] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2025-02-25 02:53:46,196] [pool-1-thread-12] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2025-02-25 02:53:46,794] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1B_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-02-25 02:53:53,283] [pool-1-thread-10] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2025-02-25 02:53:56,053] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-02-25 02:54:02,870] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-02-25 02:54:04,742] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full 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[2025-02-25 02:55:25,768] [pool-1-thread-3] Initializing /data/ascb/golgi marker 2.tif: [testng] [2025-02-25 02:55:31,145] [pool-1-thread-3] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2025-02-25 02:55:36,049] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-02-25 02:56:18,462] [pool-1-thread-5] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2025-02-25 02:56:27,786] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2025-02-25 02:56:28,511] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_Vec_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-02-25 02:56:38,926] [pool-1-thread-7] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2025-02-25 02:56:44,469] [pool-1-thread-7] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2025-02-25 02:57:29,970] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2025-02-25 02:57:38,798] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-02-25 02:57:47,882] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2025-02-25 02:58:05,699] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-02-25 02:58:17,559] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2025-02-25 02:58:24,376] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 02:59:42,634] [pool-1-thread-3] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2025-02-25 03:00:29,571] [pool-1-thread-11] Initializing /data/josh/2101to400astk.stk: [testng] [2025-02-25 03:01:23,659] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-02-25 03:01:47,535] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] [2025-02-25 03:01:53,885] [pool-1-thread-11] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2025-02-25 03:01:59,624] [pool-1-thread-11] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2025-02-25 03:02:05,159] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2025-02-25 03:02:11,034] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2025-02-25 03:02:17,962] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2025-02-25 03:02:19,376] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2025-02-25 03:02:25,500] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-02-25 03:02:26,448] [pool-1-thread-11] Initializing /data/ascb/mt aim.tif: [testng] [2025-02-25 03:02:32,306] [pool-1-thread-11] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2025-02-25 03:02:33,286] [pool-1-thread-12] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2025-02-25 03:02:39,317] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-02-25 03:02:45,612] [pool-1-thread-11] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2025-02-25 03:03:00,620] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish8_w1FRET_s1_t1.TIF: [testng] [2025-02-25 03:03:09,998] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-02-25 03:03:17,534] [pool-1-thread-6] Initializing /data/samples/diatoms3d.stk: [testng] [2025-02-25 03:03:24,042] [pool-1-thread-6] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-02-25 03:03:31,316] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-02-25 03:03:45,261] [pool-1-thread-6] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2025-02-25 03:03:52,679] [pool-1-thread-6] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-02-25 03:04:12,127] [pool-1-thread-3] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2025-02-25 03:04:19,698] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-02-25 03:04:53,718] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-02-25 03:05:08,376] [pool-1-thread-8] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-02-25 03:05:27,789] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-02-25 03:05:39,778] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-02-25 03:05:50,019] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-02-25 03:06:03,326] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2025-02-25 03:06:22,639] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-02-25 03:08:57,115] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-02-25 03:09:04,934] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 04:35:55,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:35:55,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:35:55,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-25_04-35-55.log] [testng] 04:35:55,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3865fd75 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 170 minutes 20 seconds Finished: SUCCESS