Started by upstream project "BIOFORMATS-test-repo" build number 358 originally caused by: Started by upstream project "Trigger" build number 384 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12741269456877098113.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57024_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:45:16,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:45:16,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:45:16,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:45:16,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:45:16,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:45:16,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:45:16,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:45:16,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:45:16,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:45:16,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:45:16,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:45:16,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:45:16,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:45:16,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:45:16,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:45:16,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:45:16,891 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:45:16,891 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:45:16,892 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:45:16,892 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:45:16,892 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:45:16,893 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:45:16,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-26 00:45:16,902] [main] java.version = 17.0.2 [testng] 00:45:16,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:45:16,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:16,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-26_00-45-16.log] [testng] 00:45:16,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-02-26 00:45:16,951] [main] testng.directory = /data [testng] [2025-02-26 00:45:16,951] [main] testng.configDirectory = /config [testng] [2025-02-26 00:45:16,959] [main] testng.multiplier = 1.0 [testng] [2025-02-26 00:45:16,960] [main] testng.in-memory = false [testng] [2025-02-26 00:45:16,960] [main] testng.allow-missing = false [testng] [2025-02-26 00:45:16,960] [main] user.language = en [testng] [2025-02-26 00:45:16,960] [main] user.country = ${user.country} [testng] [2025-02-26 00:45:16,961] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-26 00:45:17,459] [main] ---------------------------------------- [testng] [2025-02-26 00:45:17,459] [main] Total files: 25 [testng] [2025-02-26 00:45:17,459] [main] Scan time: 0.498 s (19 ms/file) [testng] [2025-02-26 00:45:17,459] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-26 00:45:19,261] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 00:45:19,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:45:19,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-26_00-45-19.log] [testng] 00:45:19,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bdd9621 - End of configuration. [testng] [2025-02-26 00:45:19,311] [pool-1-thread-12] Initializing /data/jqd/sixteenBit.pict: [testng] 00:45:19,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:45:19,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-26_00-45-19.log] [testng] 00:45:19,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188edbbf - End of configuration. [testng] [2025-02-26 00:45:19,344] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] 00:45:19,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:45:19,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-26_00-45-19.log] [testng] 00:45:19,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b475107 - End of configuration. [testng] [2025-02-26 00:45:19,384] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:45:19,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:45:19,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-26_00-45-19.log] [testng] 00:45:19,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45082449 - End of configuration. [testng] [2025-02-26 00:45:19,437] [pool-1-thread-9] Initializing /data/misc/planet.pict: [testng] 00:45:19,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:45:19,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-26_00-45-19.log] [testng] 00:45:19,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cc640ab - End of configuration. [testng] [2025-02-26 00:45:19,482] [pool-1-thread-8] Initializing /data/jqd/mire32.pict: [testng] 00:45:19,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:45:19,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-26_00-45-19.log] [testng] 00:45:19,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40418caf - End of configuration. [testng] [2025-02-26 00:45:19,507] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 00:45:19,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:45:19,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-26_00-45-19.log] [testng] 00:45:19,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@471c79dd - End of configuration. [testng] [2025-02-26 00:45:19,547] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:45:19,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:45:19,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-26_00-45-19.log] [testng] 00:45:19,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@123aff00 - End of configuration. [testng] [2025-02-26 00:45:19,584] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:45:19,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:45:19,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-26_00-45-19.log] [testng] 00:45:19,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bae4230 - End of configuration. [testng] [2025-02-26 00:45:19,604] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:45:19,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:45:19,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-26_00-45-19.log] [testng] 00:45:19,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49007360 - End of configuration. [testng] [2025-02-26 00:45:19,803] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 00:45:19,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:45:19,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-26_00-45-19.log] [testng] 00:45:19,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@207ef590 - End of configuration. [testng] [2025-02-26 00:45:19,830] [pool-1-thread-2] Initializing /data/misc/planet.png: [testng] 00:45:19,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:45:19,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:19,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-26_00-45-19.log] [testng] 00:45:19,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52563839 - End of configuration. [testng] [2025-02-26 00:45:21,422] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] [2025-02-26 00:45:21,436] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] [2025-02-26 00:45:21,460] [pool-1-thread-8] Initializing /data/misc/planet2.pict: [testng] [2025-02-26 00:45:21,520] [pool-1-thread-3] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-02-26 00:45:21,544] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2025-02-26 00:45:21,597] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2025-02-26 00:45:21,619] [pool-1-thread-11] Initializing /data/brian/images/VENUS.pct: [testng] [2025-02-26 00:45:21,646] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2025-02-26 00:45:21,718] [pool-1-thread-9] Initializing /data/brian/images/BLK.PCT: [testng] [2025-02-26 00:45:22,240] [pool-1-thread-10] Initializing /data/brian/images/BLU.PCT: [testng] [2025-02-26 00:45:22,270] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2025-02-26 00:45:22,678] [pool-1-thread-2] Initializing /data/brian/images/WHT.PCT: [testng] [2025-02-26 00:45:22,843] [pool-1-thread-6] Initializing /data/jqd/32bit.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS