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Started by upstream project "BIOFORMATS-test-repo" build number 359 originally caused by: Started by upstream project "Trigger" build number 385 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4875389792810783354.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57189_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:55:56,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:55:56,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:55:56,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:55:56,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:55:56,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:55:56,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:55:56,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:55:56,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:55:56,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:55:56,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:55:56,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:55:56,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:55:57,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:55:57,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:55:57,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:55:57,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:55:57,154 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:55:57,154 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:55:57,154 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:55:57,155 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:55:57,155 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:55:57,155 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:55:57,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-27 00:55:57,165] [main] java.version = 21 [testng] 00:55:57,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:55:57,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:57,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-27_00-55-57.log] [testng] 00:55:57,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-02-27 00:55:57,215] [main] testng.directory = /data [testng] [2025-02-27 00:55:57,215] [main] testng.configDirectory = /config [testng] [2025-02-27 00:55:57,224] [main] testng.multiplier = 1.0 [testng] [2025-02-27 00:55:57,224] [main] testng.in-memory = false [testng] [2025-02-27 00:55:57,225] [main] testng.allow-missing = false [testng] [2025-02-27 00:55:57,225] [main] user.language = en [testng] [2025-02-27 00:55:57,225] [main] user.country = ${user.country} [testng] [2025-02-27 00:55:57,225] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-27 00:55:57,880] [main] ---------------------------------------- [testng] [2025-02-27 00:55:57,881] [main] Total files: 25 [testng] [2025-02-27 00:55:57,881] [main] Scan time: 0.655 s (26 ms/file) [testng] [2025-02-27 00:55:57,882] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-27 00:56:00,460] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] 00:56:00,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:56:00,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-27_00-56-00.log] [testng] 00:56:00,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2128bff1 - End of configuration. [testng] [2025-02-27 00:56:00,524] [pool-1-thread-12] Initializing /data/misc/planet.png: [testng] 00:56:00,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:56:00,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-27_00-56-00.log] [testng] 00:56:00,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d1d239e - End of configuration. [testng] [2025-02-27 00:56:00,534] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:56:00,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:56:00,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-27_00-56-00.log] [testng] 00:56:00,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b282356 - End of configuration. [testng] [2025-02-27 00:56:00,656] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 00:56:00,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:56:00,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-27_00-56-00.log] [testng] 00:56:00,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509b7c2f - End of configuration. [testng] [2025-02-27 00:56:00,763] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] 00:56:00,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:56:00,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-27_00-56-00.log] [testng] 00:56:00,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@115d85fe - End of configuration. [testng] [2025-02-27 00:56:00,821] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 00:56:00,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:56:00,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-27_00-56-00.log] [testng] 00:56:00,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0c73f5 - End of configuration. [testng] [2025-02-27 00:56:00,869] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:56:00,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:56:00,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-27_00-56-00.log] [testng] 00:56:00,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a83fbe7 - End of configuration. [testng] [2025-02-27 00:56:00,961] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:56:00,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:56:00,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:00,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-27_00-56-00.log] [testng] 00:56:00,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b0710a - End of configuration. [testng] [2025-02-27 00:56:01,144] [pool-1-thread-5] Initializing /data/misc/swlogo.pict: [testng] 00:56:01,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:56:01,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:01,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-27_00-56-01.log] [testng] 00:56:01,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c544086 - End of configuration. [testng] [2025-02-27 00:56:01,207] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] 00:56:01,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:56:01,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:01,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-27_00-56-01.log] [testng] 00:56:01,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16df42d7 - End of configuration. [testng] [2025-02-27 00:56:01,259] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:56:01,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:56:01,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:01,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-27_00-56-01.log] [testng] 00:56:01,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c544f1d - End of configuration. [testng] [2025-02-27 00:56:01,447] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT: [testng] 00:56:01,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:56:01,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:56:01,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-27_00-56-01.log] [testng] 00:56:01,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c504651 - End of configuration. [testng] [2025-02-27 00:56:03,487] [pool-1-thread-8] Initializing /data/misc/planet2.pict: [testng] [2025-02-27 00:56:03,540] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-02-27 00:56:03,585] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2025-02-27 00:56:03,632] [pool-1-thread-5] Initializing /data/brian/images/BLU.PCT: [testng] [2025-02-27 00:56:03,696] [pool-1-thread-4] Initializing /data/jqd/32bit.pict: [testng] [2025-02-27 00:56:03,764] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2025-02-27 00:56:03,819] [pool-1-thread-2] Initializing /data/brian/images/GRN.PCT: [testng] [2025-02-27 00:56:03,921] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] [2025-02-27 00:56:04,127] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT: [testng] [2025-02-27 00:56:04,524] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2025-02-27 00:56:05,109] [pool-1-thread-1] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2025-02-27 00:56:05,181] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2025-02-27 00:56:05,314] [pool-1-thread-5] Initializing /data/misc/planet.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS