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Started by upstream project "BIOFORMATS-test-repo" build number 359 originally caused by: Started by upstream project "Trigger" build number 385 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12790748172407960286.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57272_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:23:04,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 03:23:04,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 03:23:04,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:23:04,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:23:04,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:23:04,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:23:04,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:23:04,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:23:04,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:23:04,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:23:04,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:23:04,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:23:05,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:23:05,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:23:05,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:23:05,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:23:05,162 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:23:05,162 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:23:05,162 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:23:05,162 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:23:05,163 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 03:23:05,163 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 03:23:05,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-27 03:23:05,173] [main] java.version = 21 [testng] 03:23:05,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:23:05,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:05,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-27_03-23-05.log] [testng] 03:23:05,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-02-27 03:23:05,223] [main] testng.directory = /data [testng] [2025-02-27 03:23:05,224] [main] testng.configDirectory = /config [testng] [2025-02-27 03:23:05,232] [main] testng.multiplier = 1.0 [testng] [2025-02-27 03:23:05,233] [main] testng.in-memory = false [testng] [2025-02-27 03:23:05,233] [main] testng.allow-missing = false [testng] [2025-02-27 03:23:05,233] [main] user.language = en [testng] [2025-02-27 03:23:05,233] [main] user.country = ${user.country} [testng] [2025-02-27 03:23:05,233] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-02-27 03:23:10,406] [main] ---------------------------------------- [testng] [2025-02-27 03:23:10,406] [main] Total files: 32 [testng] [2025-02-27 03:23:10,406] [main] Scan time: 5.173 s (161 ms/file) [testng] [2025-02-27 03:23:10,407] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-27 03:23:53,129] [pool-1-thread-1] Initializing /data/geert/bad example1.jpg: [testng] 03:23:53,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:23:53,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:53,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-27_03-23-53.log] [testng] 03:23:53,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48df0134 - End of configuration. [testng] [2025-02-27 03:23:53,439] [pool-1-thread-12] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] 03:23:53,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:23:53,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:53,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-27_03-23-53.log] [testng] 03:23:53,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60feb227 - End of configuration. [testng] [2025-02-27 03:23:54,345] [pool-1-thread-11] Initializing /data/adrian/test_img.1sc: [testng] 03:23:54,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:23:54,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:54,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-27_03-23-54.log] [testng] 03:23:54,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6284e3a0 - End of configuration. [testng] [2025-02-27 03:23:55,303] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] 03:23:55,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:23:55,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:55,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-27_03-23-55.log] [testng] 03:23:55,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eaa8ab - End of configuration. [testng] [2025-02-27 03:23:56,299] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc.jpg: [testng] 03:23:56,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:23:56,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:56,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-27_03-23-56.log] [testng] 03:23:56,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b55ba8c - End of configuration. [testng] [2025-02-27 03:23:56,631] [pool-1-thread-8] Initializing /data/qa-29469/bad3.1sc: [testng] 03:23:56,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:23:56,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:56,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-27_03-23-56.log] [testng] 03:23:56,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@530fbc6c - End of configuration. [testng] [2025-02-27 03:23:57,528] [pool-1-thread-7] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 03:23:57,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:23:57,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:57,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-27_03-23-57.log] [testng] 03:23:57,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ea58e5b - End of configuration. [testng] [2025-02-27 03:23:58,426] [pool-1-thread-6] Initializing /data/keith/pg020410saur3.1sc: [testng] 03:23:58,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:23:58,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:58,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-27_03-23-58.log] [testng] 03:23:58,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c49573 - End of configuration. [testng] [2025-02-27 03:23:59,305] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc: [testng] 03:23:59,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:23:59,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:59,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-27_03-23-59.log] [testng] 03:23:59,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@227864ce - End of configuration. [testng] [2025-02-27 03:24:00,192] [pool-1-thread-4] Initializing /data/keith/PF020328saur v3.1sc: [testng] 03:24:00,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:24:00,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:24:00,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-27_03-24-00.log] [testng] 03:24:00,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef48e01 - End of configuration. [testng] [2025-02-27 03:24:01,067] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 03:24:01,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:24:01,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:24:01,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-27_03-24-01.log] [testng] 03:24:01,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7670c1e4 - End of configuration. [testng] [2025-02-27 03:24:04,183] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 03:24:04,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:24:04,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:24:04,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-27_03-24-04.log] [testng] 03:24:04,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58134973 - End of configuration. [testng] [2025-02-27 03:24:12,329] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2025-02-27 03:24:15,694] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2025-02-27 03:24:18,775] [pool-1-thread-12] Initializing /data/samples/imagesEight.1sc: [testng] [2025-02-27 03:24:19,646] [pool-1-thread-7] Initializing /data/samples/Criterion.1sc: [testng] [2025-02-27 03:24:20,469] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-02-27 03:24:23,243] [pool-1-thread-9] Initializing /data/qa-29459/bad.jpg: [testng] [2025-02-27 03:24:23,509] [pool-1-thread-1] Initializing /data/keith/test2.1sc: [testng] [2025-02-27 03:24:24,348] [pool-1-thread-5] Initializing /data/keith/test.1sc: [testng] [2025-02-27 03:24:25,149] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2025-02-27 03:24:25,998] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2025-02-27 03:24:26,913] [pool-1-thread-8] Initializing /data/qa-29469/bad2.1sc: [testng] [2025-02-27 03:24:33,605] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2025-02-27 03:24:34,610] [pool-1-thread-9] Initializing /data/qa-29459/bad.1sc: [testng] [2025-02-27 03:24:35,491] [pool-1-thread-7] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-02-27 03:24:36,304] [pool-1-thread-5] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2025-02-27 03:24:39,210] [pool-1-thread-1] Initializing /data/qa-29469/good.1sc: [testng] [2025-02-27 03:24:40,067] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2025-02-27 03:24:42,913] [pool-1-thread-2] Initializing /data/david/Opened in imageJ.tiff: [testng] [2025-02-27 03:24:45,647] [pool-1-thread-10] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2025-02-27 03:24:46,504] [pool-1-thread-3] Initializing /data/geert/good example1.1sc.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 3 seconds Finished: SUCCESS