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Started by upstream project "BIOFORMATS-test-repo" build number 360 originally caused by: Started by upstream project "Trigger" build number 386 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10903805290176009110.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57303_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:22:48,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:22:48,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:22:48,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:48,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:48,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:48,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:48,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:48,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:48,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:48,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:48,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:48,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:48,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:48,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:48,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:48,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:48,679 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:48,679 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:48,679 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:48,680 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:48,680 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:22:48,681 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:22:48,681 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-28 00:22:48,691] [main] java.version = 1.8.0_342 [testng] 00:22:48,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:48,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:48,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-28_00-22-48.log] [testng] 00:22:48,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-02-28 00:22:48,745] [main] testng.directory = /data [testng] [2025-02-28 00:22:48,746] [main] testng.configDirectory = /config [testng] [2025-02-28 00:22:48,758] [main] testng.multiplier = 1.0 [testng] [2025-02-28 00:22:48,758] [main] testng.in-memory = false [testng] [2025-02-28 00:22:48,758] [main] testng.allow-missing = false [testng] [2025-02-28 00:22:48,758] [main] user.language = en [testng] [2025-02-28 00:22:48,758] [main] user.country = ${user.country} [testng] [2025-02-28 00:22:48,759] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-02-28 00:22:49,568] [main] ---------------------------------------- [testng] [2025-02-28 00:22:49,568] [main] Total files: 36 [testng] [2025-02-28 00:22:49,568] [main] Scan time: 0.809 s (22 ms/file) [testng] [2025-02-28 00:22:49,568] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-28 00:22:51,174] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 00:22:51,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:51,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-28_00-22-51.log] [testng] 00:22:51,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353dcf9c - End of configuration. [testng] [2025-02-28 00:22:51,223] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 00:22:51,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:51,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-28_00-22-51.log] [testng] 00:22:51,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@212dc2c4 - End of configuration. [testng] [2025-02-28 00:22:51,234] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 00:22:51,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:51,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-28_00-22-51.log] [testng] 00:22:51,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@645d605a - End of configuration. [testng] [2025-02-28 00:22:51,248] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 00:22:51,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:51,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-28_00-22-51.log] [testng] 00:22:51,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a85b25d - End of configuration. [testng] [2025-02-28 00:22:51,260] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 00:22:51,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:51,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-28_00-22-51.log] [testng] 00:22:51,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c94ba29 - End of configuration. [testng] [2025-02-28 00:22:51,273] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 00:22:51,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:51,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-28_00-22-51.log] [testng] 00:22:51,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51444337 - End of configuration. [testng] [2025-02-28 00:22:51,283] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 00:22:51,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:51,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-28_00-22-51.log] [testng] 00:22:51,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6843df60 - End of configuration. [testng] [2025-02-28 00:22:51,293] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 00:22:51,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:51,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-28_00-22-51.log] [testng] 00:22:51,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77cce6b4 - End of configuration. [testng] [2025-02-28 00:22:51,302] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 00:22:51,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:51,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-28_00-22-51.log] [testng] 00:22:51,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@563f85a4 - End of configuration. [testng] [2025-02-28 00:22:51,312] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 00:22:51,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:51,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-28_00-22-51.log] [testng] 00:22:51,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44451871 - End of configuration. [testng] [2025-02-28 00:22:51,321] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 00:22:51,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:51,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-28_00-22-51.log] [testng] 00:22:51,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41962d36 - End of configuration. [testng] [2025-02-28 00:22:51,332] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 00:22:51,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:51,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-28_00-22-51.log] [testng] 00:22:51,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e20353 - End of configuration. [testng] [2025-02-28 00:22:55,015] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-02-28 00:22:55,026] [pool-1-thread-12] Initializing /data/generated/mri-stack22.pcx: [testng] [2025-02-28 00:22:55,040] [pool-1-thread-3] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-02-28 00:22:55,050] [pool-1-thread-7] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-02-28 00:22:55,059] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-02-28 00:22:55,072] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] [2025-02-28 00:22:55,081] [pool-1-thread-1] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-02-28 00:22:55,090] [pool-1-thread-5] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-02-28 00:22:55,097] [pool-1-thread-9] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-02-28 00:22:55,106] [pool-1-thread-2] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-02-28 00:22:55,118] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2025-02-28 00:22:55,130] [pool-1-thread-10] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-02-28 00:22:55,838] [pool-1-thread-5] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-02-28 00:22:55,893] [pool-1-thread-11] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-02-28 00:22:55,944] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: [testng] [2025-02-28 00:22:55,971] [pool-1-thread-9] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2025-02-28 00:22:55,994] [pool-1-thread-2] Initializing /data/generated/mri-stack6.pcx: [testng] [2025-02-28 00:22:56,073] [pool-1-thread-6] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-02-28 00:22:56,101] [pool-1-thread-3] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-02-28 00:22:56,124] [pool-1-thread-7] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-02-28 00:22:56,322] [pool-1-thread-5] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-02-28 00:22:56,426] [pool-1-thread-11] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-02-28 00:22:56,481] [pool-1-thread-8] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS