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Started by upstream project "BIOFORMATS-test-repo" build number 360 originally caused by: Started by upstream project "Trigger" build number 386 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6386952612951055228.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57330_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:31:47,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:31:47,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:31:47,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:47,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:47,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:31:47,797 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:31:47,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:31:47,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:47,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:47,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:31:47,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:31:47,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:31:48,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:31:48,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:31:48,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:31:48,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:31:48,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:31:48,118 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:31:48,118 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:31:48,118 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:31:48,118 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:31:48,119 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:31:48,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 321 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-02-28 00:31:48,130] [main] java.version = 1.8.0_342 [testng] 00:31:48,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:31:48,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:48,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-02-28_00-31-48.log] [testng] 00:31:48,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-02-28 00:31:48,185] [main] testng.directory = /data [testng] [2025-02-28 00:31:48,186] [main] testng.configDirectory = /config [testng] [2025-02-28 00:31:48,199] [main] testng.multiplier = 1.0 [testng] [2025-02-28 00:31:48,199] [main] testng.in-memory = false [testng] [2025-02-28 00:31:48,199] [main] testng.allow-missing = false [testng] [2025-02-28 00:31:48,199] [main] user.language = en [testng] [2025-02-28 00:31:48,199] [main] user.country = ${user.country} [testng] [2025-02-28 00:31:48,199] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-02-28 00:34:21,122] [main] ---------------------------------------- [testng] [2025-02-28 00:34:21,122] [main] Total files: 226 [testng] [2025-02-28 00:34:21,123] [main] Scan time: 152.923 s (676 ms/file) [testng] [2025-02-28 00:34:21,123] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-02-28 00:35:15,184] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif: [testng] 00:35:15,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:35:15,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-02-28_00-35-15.log] [testng] 00:35:15,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17c14817 - End of configuration. [testng] [2025-02-28 00:35:15,436] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.avi: [testng] 00:35:15,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:35:15,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-02-28_00-35-15.log] [testng] 00:35:15,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233dca2c - End of configuration. [testng] [2025-02-28 00:35:15,495] [pool-1-thread-11] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 00:35:15,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:35:15,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-02-28_00-35-15.log] [testng] 00:35:15,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b1b533 - End of configuration. [testng] [2025-02-28 00:35:15,512] [pool-1-thread-10] Initializing /data/iplab/16Bit XRay.IPL: [testng] 00:35:15,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:35:15,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-02-28_00-35-15.log] [testng] 00:35:15,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48511f05 - End of configuration. [testng] [2025-02-28 00:35:15,536] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL: [testng] 00:35:15,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:35:15,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-02-28_00-35-15.log] [testng] 00:35:15,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c2fdef2 - End of configuration. [testng] [2025-02-28 00:35:15,561] [pool-1-thread-8] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 00:35:15,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:35:15,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-02-28_00-35-15.log] [testng] 00:35:15,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f61f4ac - End of configuration. [testng] [2025-02-28 00:35:15,664] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 00:35:15,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:35:15,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-02-28_00-35-15.log] [testng] 00:35:15,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb38a89 - End of configuration. [testng] [2025-02-28 00:35:15,839] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL: [testng] 00:35:15,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:35:15,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-02-28_00-35-15.log] [testng] 00:35:15,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f1d98be - End of configuration. [testng] [2025-02-28 00:35:15,887] [pool-1-thread-5] Initializing /data/iplab/Color Image.IPL: [testng] 00:35:15,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:35:15,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-02-28_00-35-15.log] [testng] 00:35:15,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f8cbe25 - End of configuration. [testng] [2025-02-28 00:35:15,935] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL: [testng] 00:35:15,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:35:15,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-02-28_00-35-15.log] [testng] 00:35:15,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf5d368 - End of configuration. [testng] [2025-02-28 00:35:15,973] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 00:35:15,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:35:15,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:15,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-02-28_00-35-15.log] [testng] 00:35:15,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbb89e8 - End of configuration. [testng] [2025-02-28 00:35:16,013] [pool-1-thread-2] Initializing /data/fluoview/SpineAnimation.tif: [testng] 00:35:16,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:35:16,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:16,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-02-28_00-35-16.log] [testng] 00:35:16,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3299781a - End of configuration. [testng] [2025-02-28 00:35:18,338] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-02-28 00:35:18,375] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-02-28 00:35:18,407] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2025-02-28 00:35:18,557] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2025-02-28 00:35:18,745] [pool-1-thread-10] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-02-28 00:35:18,765] [pool-1-thread-6] Initializing /data/iplab/Chromosomes.IPL: [testng] [2025-02-28 00:35:18,791] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2025-02-28 00:35:18,927] [pool-1-thread-12] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2025-02-28 00:35:19,041] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2025-02-28 00:35:19,726] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-02-28 00:35:20,178] [pool-1-thread-8] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2025-02-28 00:35:20,721] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2025-02-28 00:35:21,029] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-02-28 00:35:21,326] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL: [testng] [2025-02-28 00:35:21,414] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2025-02-28 00:35:21,683] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 40 seconds Finished: SUCCESS