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Started by upstream project "BIOFORMATS-test-repo" build number 41 originally caused by: Started by upstream project "Trigger" build number 47 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11472590165197100016.sh + '[' targa = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_5750_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:29:19,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:29:19,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:29:19,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:19,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:19,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:29:19,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:29:19,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:29:19,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:19,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:19,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:29:19,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:29:19,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:29:20,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:29:20,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:29:20,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:29:20,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:29:20,140 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:29:20,140 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:29:20,140 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:29:20,141 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:29:20,141 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:29:20,142 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:29:20,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-22 01:29:20,155] [main] java.version = 1.8.0_342 [testng] 01:29:20,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:29:20,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:20,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-22_01-29-20.log] [testng] 01:29:20,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-22 01:29:20,281] [main] testng.directory = /data [testng] [2024-04-22 01:29:20,283] [main] testng.configDirectory = /config [testng] [2024-04-22 01:29:20,366] [main] testng.multiplier = 1.0 [testng] [2024-04-22 01:29:20,378] [main] testng.in-memory = false [testng] [2024-04-22 01:29:20,383] [main] testng.allow-missing = false [testng] [2024-04-22 01:29:20,388] [main] user.language = fr [testng] [2024-04-22 01:29:20,389] [main] user.country = FR [testng] [2024-04-22 01:29:20,390] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-22 01:29:20,870] [main] ---------------------------------------- [testng] [2024-04-22 01:29:20,871] [main] Total files: 21 [testng] [2024-04-22 01:29:20,871] [main] Scan time: 0.479 s (22 ms/file) [testng] [2024-04-22 01:29:20,871] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-22 01:29:21,911] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 01:29:21,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:21,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:21,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-22_01-29-21.log] [testng] 01:29:21,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4753d50e - End of configuration. [testng] [2024-04-22 01:29:21,928] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 01:29:21,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:21,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:21,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-22_01-29-21.log] [testng] 01:29:21,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8294b9 - End of configuration. [testng] [2024-04-22 01:29:22,078] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 01:29:22,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:22,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-22_01-29-22.log] [testng] 01:29:22,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d72276c - End of configuration. [testng] [2024-04-22 01:29:22,098] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:29:22,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:22,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-22_01-29-22.log] [testng] 01:29:22,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@755508aa - End of configuration. [testng] [2024-04-22 01:29:22,109] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 01:29:22,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:22,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-22_01-29-22.log] [testng] 01:29:22,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7a0fd6 - End of configuration. [testng] [2024-04-22 01:29:22,122] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:29:22,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:22,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-22_01-29-22.log] [testng] 01:29:22,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c13708 - End of configuration. [testng] [2024-04-22 01:29:22,131] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 01:29:22,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:22,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-22_01-29-22.log] [testng] 01:29:22,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf1777d - End of configuration. [testng] [2024-04-22 01:29:22,141] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 01:29:22,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:22,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-22_01-29-22.log] [testng] 01:29:22,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d21947 - End of configuration. [testng] [2024-04-22 01:29:22,151] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 01:29:22,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:22,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-22_01-29-22.log] [testng] 01:29:22,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e27396c - End of configuration. [testng] [2024-04-22 01:29:22,162] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:29:22,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:22,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-22_01-29-22.log] [testng] 01:29:22,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ef646e - End of configuration. [testng] [2024-04-22 01:29:22,172] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:29:22,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:22,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-22_01-29-22.log] [testng] 01:29:22,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f67addd - End of configuration. [testng] [2024-04-22 01:29:22,181] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 01:29:22,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:22,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-22_01-29-22.log] [testng] 01:29:22,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff2078 - End of configuration. [testng] [2024-04-22 01:29:23,785] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA: [testng] [2024-04-22 01:29:23,793] [pool-1-thread-1] Initializing /data/samples/MARBLES.TGA: [testng] [2024-04-22 01:29:23,809] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] [2024-04-22 01:29:23,817] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] [2024-04-22 01:29:23,824] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] [2024-04-22 01:29:23,835] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] [2024-04-22 01:29:23,844] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: [testng] [2024-04-22 01:29:23,852] [pool-1-thread-3] Initializing /data/samples/UTC24.TGA: [testng] [2024-04-22 01:29:23,858] [pool-1-thread-7] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS