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Started by upstream project "BIOFORMATS-test-repo" build number 361 originally caused by: Started by upstream project "Trigger" build number 387 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1199949477564309617.sh + '[' avi = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57554_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:42:17,752 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:42:17,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 01:42:17,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:42:17,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:42:17,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:42:17,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:42:17,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:42:17,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:42:17,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:42:17,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:42:17,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:42:17,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:42:17,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:42:17,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:42:17,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:42:17,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:42:17,944 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:42:17,944 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:42:17,944 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:42:17,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:42:17,945 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 01:42:17,946 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 01:42:17,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-01 01:42:17,954] [main] java.version = 11.0.16 [testng] 01:42:17,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:42:17,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:42:17,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-01_01-42-17.log] [testng] 01:42:17,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-01 01:42:18,000] [main] testng.directory = /data [testng] [2025-03-01 01:42:18,001] [main] testng.configDirectory = /config [testng] [2025-03-01 01:42:18,010] [main] testng.multiplier = 1.0 [testng] [2025-03-01 01:42:18,011] [main] testng.in-memory = false [testng] [2025-03-01 01:42:18,011] [main] testng.allow-missing = false [testng] [2025-03-01 01:42:18,011] [main] user.language = en [testng] [2025-03-01 01:42:18,012] [main] user.country = ${user.country} [testng] [2025-03-01 01:42:18,012] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-01 01:42:21,761] [main] ---------------------------------------- [testng] [2025-03-01 01:42:21,761] [main] Total files: 40 [testng] [2025-03-01 01:42:21,761] [main] Scan time: 3.749 s (93 ms/file) [testng] [2025-03-01 01:42:21,761] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-01 01:43:07,949] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 01:43:07,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:43:07,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:07,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-01_01-43-07.log] [testng] 01:43:07,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c8f1cf6 - End of configuration. [testng] [2025-03-01 01:43:08,216] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 01:43:08,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:43:08,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:08,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-01_01-43-08.log] [testng] 01:43:08,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67078f63 - End of configuration. [testng] [2025-03-01 01:43:08,520] [pool-1-thread-11] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 01:43:08,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:43:08,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:08,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-01_01-43-08.log] [testng] 01:43:08,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ddca989 - End of configuration. [testng] [2025-03-01 01:43:08,772] [pool-1-thread-10] Initializing /data/jae/20xD_5minfor14h.avi: [testng] 01:43:08,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:43:08,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:08,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-01_01-43-08.log] [testng] 01:43:08,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54be33fa - End of configuration. [testng] [2025-03-01 01:43:09,130] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] 01:43:09,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:43:09,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:09,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-01_01-43-09.log] [testng] 01:43:09,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ac0cfe6 - End of configuration. [testng] [2025-03-01 01:43:09,364] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 01:43:09,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:43:09,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:09,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-01_01-43-09.log] [testng] 01:43:09,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c8fb472 - End of configuration. [testng] [2025-03-01 01:43:09,575] [pool-1-thread-7] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 01:43:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:43:09,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:09,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-01_01-43-09.log] [testng] 01:43:09,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21ca4600 - End of configuration. [testng] [2025-03-01 01:43:09,790] [pool-1-thread-6] Initializing /data/simon/24_bit_problem.avi: [testng] 01:43:09,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:43:09,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:09,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-01_01-43-09.log] [testng] 01:43:09,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4baa53bb - End of configuration. [testng] [2025-03-01 01:43:10,054] [pool-1-thread-5] Initializing /data/qa-11011/M-flow10001.avi: [testng] 01:43:10,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:43:10,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:10,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-01_01-43-10.log] [testng] 01:43:10,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462783ab - End of configuration. [testng] [2025-03-01 01:43:10,319] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi: [testng] 01:43:10,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:43:10,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:10,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-01_01-43-10.log] [testng] 01:43:10,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4f40d3 - End of configuration. [testng] [2025-03-01 01:43:10,517] [pool-1-thread-3] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 01:43:10,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:43:10,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:10,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-01_01-43-10.log] [testng] 01:43:10,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690b4f85 - End of configuration. [testng] [2025-03-01 01:43:10,691] [pool-1-thread-2] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 01:43:10,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:43:10,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:10,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-01_01-43-10.log] [testng] 01:43:10,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b56f1ea - End of configuration. [testng] [2025-03-01 01:43:14,517] [pool-1-thread-11] Initializing /data/chris/APZ04_009.avi: [testng] [2025-03-01 01:43:17,332] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2025-03-01 01:43:17,800] [pool-1-thread-3] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2025-03-01 01:43:18,049] [pool-1-thread-9] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2025-03-01 01:43:19,426] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2025-03-01 01:43:19,727] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2025-03-01 01:43:19,934] [pool-1-thread-6] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2025-03-01 01:43:20,132] [pool-1-thread-2] Initializing /data/kurt/40x_6um_2.avi: [testng] [2025-03-01 01:43:20,362] [pool-1-thread-4] Initializing /data/kurt/63x_6um.avi: [testng] [2025-03-01 01:43:20,596] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2025-03-01 01:43:20,786] [pool-1-thread-10] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2025-03-01 01:43:20,956] [pool-1-thread-5] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2025-03-01 01:43:23,038] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2025-03-01 01:43:23,286] [pool-1-thread-10] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2025-03-01 01:43:23,554] [pool-1-thread-1] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2025-03-01 01:43:23,858] [pool-1-thread-5] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2025-03-01 01:43:24,080] [pool-1-thread-6] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2025-03-01 01:43:24,328] [pool-1-thread-3] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2025-03-01 01:43:24,573] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2025-03-01 01:43:24,789] [pool-1-thread-2] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2025-03-01 01:43:25,025] [pool-1-thread-4] Initializing /data/ascb/TIRF.avi: [testng] [2025-03-01 01:43:28,051] [pool-1-thread-7] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2025-03-01 01:43:28,584] [pool-1-thread-5] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2025-03-01 01:43:28,875] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2025-03-01 01:43:29,250] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2025-03-01 01:43:29,547] [pool-1-thread-2] Initializing /data/william/worm.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 22 seconds Finished: SUCCESS