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Started by upstream project "BIOFORMATS-test-repo" build number 361
originally caused by:
 Started by upstream project "Trigger" build number 387
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13837964603356864011.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_57594_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 03:06:28,380 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 03:06:28,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
   [testng] 03:06:28,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:06:28,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:06:28,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:06:28,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:06:28,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:06:28,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:06:28,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:06:28,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:06:28,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:06:28,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:06:28,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:06:28,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:06:28,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:06:28,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:06:28,607 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:06:28,607 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:06:28,607 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:06:28,607 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:06:28,608 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
   [testng] 03:06:28,608 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
   [testng] 03:06:28,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 222 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-01 03:06:28,618] [main] java.version = 11.0.16
   [testng] 03:06:28,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:06:28,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:06:28,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-01_03-06-28.log]
   [testng] 03:06:28,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
   [testng] [2025-03-01 03:06:28,667] [main] testng.directory = /data
   [testng] [2025-03-01 03:06:28,667] [main] testng.configDirectory = /config
   [testng] [2025-03-01 03:06:28,677] [main] testng.multiplier = 1.0
   [testng] [2025-03-01 03:06:28,678] [main] testng.in-memory = false
   [testng] [2025-03-01 03:06:28,678] [main] testng.allow-missing = false
   [testng] [2025-03-01 03:06:28,679] [main] user.language = en
   [testng] [2025-03-01 03:06:28,679] [main] user.country = ${user.country}
   [testng] [2025-03-01 03:06:28,679] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-03-01 03:10:50,119] [main] ----------------------------------------
   [testng] [2025-03-01 03:10:50,119] [main] Total files: 2169
   [testng] [2025-03-01 03:10:50,119] [main] Scan time: 261.439 s (120 ms/file)
   [testng] [2025-03-01 03:10:50,119] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-01 03:27:10,674] [pool-1-thread-1] Initializing /data/juergen/Experiment/experiment_descriptor.xml: 
   [testng] 03:27:10,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:27:10,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:27:10,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-01_03-27-10.log]
   [testng] 03:27:10,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5368065b - End of configuration.
   [testng] [2025-03-01 03:27:11,071] [pool-1-thread-12] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: 
   [testng] 03:27:11,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:27:11,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:27:11,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-01_03-27-11.log]
   [testng] 03:27:11,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@484d4bf8 - End of configuration.
   [testng] [2025-03-01 03:28:17,014] [pool-1-thread-11] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: 
   [testng] 03:28:17,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:28:17,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:28:17,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-01_03-28-17.log]
   [testng] 03:28:17,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7301b - End of configuration.
   [testng] [2025-03-01 03:28:51,827] [pool-1-thread-10] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: 
   [testng] 03:28:51,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:28:51,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:28:51,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-01_03-28-51.log]
   [testng] 03:28:51,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f91c806 - End of configuration.
   [testng] [2025-03-01 03:29:04,859] [pool-1-thread-9] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: 
   [testng] 03:29:04,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:29:04,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:29:04,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-01_03-29-04.log]
   [testng] 03:29:04,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d648fe8 - End of configuration.
   [testng] [2025-03-01 03:29:55,370] [pool-1-thread-8] Initializing /data/christian/example/experiment_descriptor.xml: 
   [testng] 03:29:55,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:29:55,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:29:55,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-01_03-29-55.log]
   [testng] 03:29:55,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d748ff2 - End of configuration.
   [testng] [2025-03-01 03:29:56,101] [pool-1-thread-7] Initializing /data/ruben/plate_002/experiment_descriptor.xml: 
   [testng] 03:29:56,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:29:56,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:29:56,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-01_03-29-56.log]
   [testng] 03:29:56,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54a3e543 - End of configuration.
   [testng] [2025-03-01 03:29:58,273] [pool-1-thread-6] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: 
   [testng] 03:29:58,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:29:58,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:29:58,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-01_03-29-58.log]
   [testng] 03:29:58,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c8de73f - End of configuration.
   [testng] [2025-03-01 03:30:11,117] [pool-1-thread-5] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] 03:30:11,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:30:11,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:30:11,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-01_03-30-11.log]
   [testng] 03:30:11,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e893e93 - End of configuration.
   [testng] [2025-03-01 03:30:44,203] [pool-1-thread-4] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: 
   [testng] 03:30:44,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:30:44,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:30:44,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-01_03-30-44.log]
   [testng] 03:30:44,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa8b246 - End of configuration.
   [testng] [2025-03-01 03:33:04,041] [pool-1-thread-3] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: 
   [testng] 03:33:04,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:33:04,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:33:04,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-01_03-33-04.log]
   [testng] 03:33:04,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c5bd0bb - End of configuration.
   [testng] [2025-03-01 03:34:50,171] [pool-1-thread-2] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: 
   [testng] 03:34:50,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:34:50,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:34:50,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-01_03-34-50.log]
   [testng] 03:34:50,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3efc5eb0 - End of configuration.
   [testng] [2025-03-01 03:36:43,404] [pool-1-thread-8] Initializing /data/gideon/experiment_descriptor.xml: 
   [testng] [2025-03-01 03:37:11,109] [pool-1-thread-1] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: 
   [testng] [2025-03-01 03:39:25,552] [pool-1-thread-7] Initializing /data/nadine/experiment_descriptor.xml: 
   [testng] [2025-03-01 03:40:00,511] [pool-1-thread-7] Initializing /data/embl/Maik_001/experiment_descriptor.xml: 
   [testng] [2025-03-01 03:47:22,983] [pool-1-thread-7] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: 
   [testng] 04:44:41,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:44:41,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:44:41,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-01_04-44-41.log]
   [testng] 04:44:41,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f0a8322 - End of configuration.
   [testng] 04:45:04,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:45:04,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:45:04,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-01_04-45-04.log]
   [testng] 04:45:04,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26bc787e - End of configuration.
   [testng] 04:48:07,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:48:07,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:48:07,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-01_04-48-07.log]
   [testng] 04:48:07,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eeb2e41 - End of configuration.
   [testng] 04:48:33,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:48:33,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:48:33,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-01_04-48-33.log]
   [testng] 04:48:33,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f5073f2 - End of configuration.
   [testng] 04:53:54,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:53:54,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:53:54,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-01_04-53-54.log]
   [testng] 04:53:54,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@260754f6 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 107 minutes 30 seconds
Finished: SUCCESS