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Started by upstream project "BIOFORMATS-test-repo" build number 362 originally caused by: Started by upstream project "Trigger" build number 388 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12906586138826086844.sh + '[' lim = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57648_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:24:48,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:24:48,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 00:24:48,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:48,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:24:48,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:24:48,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:24:48,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:24:48,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:48,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:24:48,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:24:48,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:24:48,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:24:49,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:24:49,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:24:49,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:24:49,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:24:49,183 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:24:49,183 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:24:49,183 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:24:49,184 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:24:49,184 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 00:24:49,185 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 00:24:49,185 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-02 00:24:49,194] [main] java.version = 17.0.2 [testng] 00:24:49,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:24:49,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:49,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-02_00-24-49.log] [testng] 00:24:49,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-02 00:24:49,239] [main] testng.directory = /data [testng] [2025-03-02 00:24:49,239] [main] testng.configDirectory = /config [testng] [2025-03-02 00:24:49,248] [main] testng.multiplier = 1.0 [testng] [2025-03-02 00:24:49,249] [main] testng.in-memory = false [testng] [2025-03-02 00:24:49,249] [main] testng.allow-missing = false [testng] [2025-03-02 00:24:49,249] [main] user.language = en [testng] [2025-03-02 00:24:49,249] [main] user.country = ${user.country} [testng] [2025-03-02 00:24:49,249] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-02 00:24:49,680] [main] ---------------------------------------- [testng] [2025-03-02 00:24:49,680] [main] Total files: 21 [testng] [2025-03-02 00:24:49,680] [main] Scan time: 0.431 s (20 ms/file) [testng] [2025-03-02 00:24:49,680] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-02 00:24:54,806] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:24:54,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:54,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:54,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-02_00-24-54.log] [testng] 00:24:54,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@549722e2 - End of configuration. [testng] [2025-03-02 00:24:55,044] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:24:55,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:55,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-02_00-24-55.log] [testng] 00:24:55,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f902beb - End of configuration. [testng] [2025-03-02 00:24:55,239] [pool-1-thread-11] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:24:55,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:55,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-02_00-24-55.log] [testng] 00:24:55,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ff09f61 - End of configuration. [testng] [2025-03-02 00:24:55,453] [pool-1-thread-10] Initializing /data/venu/Kontrolle0002.lim: [testng] 00:24:55,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:55,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-02_00-24-55.log] [testng] 00:24:55,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d67eb11 - End of configuration. [testng] [2025-03-02 00:24:55,648] [pool-1-thread-9] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:24:55,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:55,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-02_00-24-55.log] [testng] 00:24:55,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64a0f473 - End of configuration. [testng] [2025-03-02 00:24:55,847] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim: [testng] 00:24:55,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:55,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:55,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-02_00-24-55.log] [testng] 00:24:55,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@544d2e75 - End of configuration. [testng] [2025-03-02 00:24:56,067] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:24:56,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:56,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:56,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-02_00-24-56.log] [testng] 00:24:56,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa4df47 - End of configuration. [testng] [2025-03-02 00:24:56,328] [pool-1-thread-6] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:24:56,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:56,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:56,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-02_00-24-56.log] [testng] 00:24:56,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b12ea97 - End of configuration. [testng] [2025-03-02 00:24:56,533] [pool-1-thread-5] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:24:56,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:56,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:56,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-02_00-24-56.log] [testng] 00:24:56,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@365b870d - End of configuration. [testng] [2025-03-02 00:24:56,740] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:24:56,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:56,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:56,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-02_00-24-56.log] [testng] 00:24:56,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f115d20 - End of configuration. [testng] [2025-03-02 00:24:56,927] [pool-1-thread-3] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:24:56,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:56,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:56,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-02_00-24-56.log] [testng] 00:24:56,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b41ea6 - End of configuration. [testng] [2025-03-02 00:24:57,136] [pool-1-thread-2] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:24:57,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:57,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:57,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-02_00-24-57.log] [testng] 00:24:57,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@722e9eb6 - End of configuration. [testng] [2025-03-02 00:25:01,601] [pool-1-thread-10] Initializing /data/venu/Kontrolle0016.lim: [testng] [2025-03-02 00:25:02,028] [pool-1-thread-2] Initializing /data/venu/Kontrolle0010.lim: [testng] [2025-03-02 00:25:02,495] [pool-1-thread-3] Initializing /data/venu/Kontrolle0021.lim: [testng] [2025-03-02 00:25:02,936] [pool-1-thread-6] Initializing /data/venu/Kontrolle0007.lim: [testng] [2025-03-02 00:25:03,412] [pool-1-thread-11] Initializing /data/venu/Kontrolle0013.lim: [testng] [2025-03-02 00:25:03,853] [pool-1-thread-12] Initializing /data/venu/Kontrolle0008.lim: [testng] [2025-03-02 00:25:04,297] [pool-1-thread-8] Initializing /data/venu/Kontrolle0015.lim: [testng] [2025-03-02 00:25:04,686] [pool-1-thread-1] Initializing /data/venu/Kontrolle0014.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 seconds Finished: SUCCESS