Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 362
originally caused by:
 Started by upstream project "Trigger" build number 388
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins80060972610285618.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_57760_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:18:10,430 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 03:18:10,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
   [testng] 03:18:10,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:18:10,432 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:18:10,433 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:18:10,433 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:18:10,433 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:18:10,433 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:18:10,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:18:10,434 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:18:10,434 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:18:10,435 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:18:10,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:18:10,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:18:10,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:18:10,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:18:10,617 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:18:10,617 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:18:10,617 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:18:10,617 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:18:10,617 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
   [testng] 03:18:10,618 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
   [testng] 03:18:10,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-02 03:18:10,627] [main] java.version = 17.0.2
   [testng] 03:18:10,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:18:10,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:10,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-02_03-18-10.log]
   [testng] 03:18:10,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
   [testng] [2025-03-02 03:18:10,674] [main] testng.directory = /data
   [testng] [2025-03-02 03:18:10,674] [main] testng.configDirectory = /config
   [testng] [2025-03-02 03:18:10,682] [main] testng.multiplier = 1.0
   [testng] [2025-03-02 03:18:10,683] [main] testng.in-memory = false
   [testng] [2025-03-02 03:18:10,683] [main] testng.allow-missing = false
   [testng] [2025-03-02 03:18:10,683] [main] user.language = en
   [testng] [2025-03-02 03:18:10,683] [main] user.country = ${user.country}
   [testng] [2025-03-02 03:18:10,683] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-03-02 03:18:11,143] [main] ----------------------------------------
   [testng] [2025-03-02 03:18:11,143] [main] Total files: 21
   [testng] [2025-03-02 03:18:11,143] [main] Scan time: 0.459 s (21 ms/file)
   [testng] [2025-03-02 03:18:11,143] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-02 03:18:13,609] [pool-1-thread-1] Initializing /data/samples/orbit.png: 
   [testng] 03:18:13,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:18:13,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-02_03-18-13.log]
   [testng] 03:18:13,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cc94b14 - End of configuration.
   [testng] [2025-03-02 03:18:13,682] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_two.png: 
   [testng] 03:18:13,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:18:13,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-02_03-18-13.log]
   [testng] 03:18:13,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1caeff - End of configuration.
   [testng] [2025-03-02 03:18:13,705] [pool-1-thread-11] Initializing /data/qa-7473/x.png: 
   [testng] 03:18:13,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:18:13,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-02_03-18-13.log]
   [testng] 03:18:13,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7583a5ef - End of configuration.
   [testng] [2025-03-02 03:18:13,728] [pool-1-thread-10] Initializing /data/samples/MoonPhases.png: 
   [testng] 03:18:13,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:18:13,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-02_03-18-13.log]
   [testng] 03:18:13,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f131a36 - End of configuration.
   [testng] [2025-03-02 03:18:13,753] [pool-1-thread-9] Initializing /data/samples/william_wong01.png: 
   [testng] 03:18:13,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:18:13,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-02_03-18-13.log]
   [testng] 03:18:13,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e6f0245 - End of configuration.
   [testng] [2025-03-02 03:18:13,779] [pool-1-thread-8] Initializing /data/samples/joanna_viera01.png: 
   [testng] 03:18:13,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:18:13,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-02_03-18-13.log]
   [testng] 03:18:13,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ce18ab9 - End of configuration.
   [testng] [2025-03-02 03:18:13,807] [pool-1-thread-7] Initializing /data/samples/william_wong05.png: 
   [testng] 03:18:13,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:18:13,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-02_03-18-13.log]
   [testng] 03:18:13,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a9ab1b - End of configuration.
   [testng] [2025-03-02 03:18:13,843] [pool-1-thread-6] Initializing /data/samples/atom.png: 
   [testng] 03:18:13,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:18:13,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-02_03-18-13.log]
   [testng] 03:18:13,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@708b0f6f - End of configuration.
   [testng] [2025-03-02 03:18:13,880] [pool-1-thread-5] Initializing /data/samples/spinfox.png: 
   [testng] 03:18:13,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:18:13,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-02_03-18-13.log]
   [testng] 03:18:13,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb7b5ce - End of configuration.
   [testng] [2025-03-02 03:18:13,917] [pool-1-thread-4] Initializing /data/samples/chompy2.png: 
   [testng] 03:18:13,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:18:13,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-02_03-18-13.log]
   [testng] 03:18:13,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d33b33 - End of configuration.
   [testng] [2025-03-02 03:18:13,950] [pool-1-thread-3] Initializing /data/qa-7473/n.tif: 
   [testng] 03:18:13,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:18:13,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:13,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-02_03-18-13.log]
   [testng] 03:18:13,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d5b29e1 - End of configuration.
   [testng] [2025-03-02 03:18:14,879] [pool-1-thread-2] Initializing /data/samples/daniel_coltri_one.png: 
   [testng] 03:18:14,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:18:14,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:18:14,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-02_03-18-14.log]
   [testng] 03:18:14,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5206cd29 - End of configuration.
   [testng] [2025-03-02 03:18:16,685] [pool-1-thread-7] Initializing /data/samples/StarV838.png: 
   [testng] [2025-03-02 03:18:16,705] [pool-1-thread-8] Initializing /data/colin/test.sfstdge.png: 
   [testng] [2025-03-02 03:18:16,724] [pool-1-thread-12] Initializing /data/samples/PhugAnimation3.png: 
   [testng] [2025-03-02 03:18:16,746] [pool-1-thread-11] Initializing /data/samples/phug_logo.png: 
   [testng] [2025-03-02 03:18:17,042] [pool-1-thread-1] Initializing /data/samples/monkey_apng.png: 
   [testng] [2025-03-02 03:18:17,075] [pool-1-thread-10] Initializing /data/samples/william_wong04.png: 
   [testng] [2025-03-02 03:18:17,106] [pool-1-thread-5] Initializing /data/samples/Sun.png: 
   [testng] [2025-03-02 03:18:17,139] [pool-1-thread-2] Initializing /data/samples/Matrix.png: 
   [testng] [2025-03-02 03:18:17,179] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS