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Started by upstream project "BIOFORMATS-test-repo" build number 362 originally caused by: Started by upstream project "Trigger" build number 388 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7260478394405684600.sh + '[' psd = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57766_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:34:27,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 03:34:27,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 03:34:27,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:34:27,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:34:27,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:34:27,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:34:27,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:34:27,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:34:27,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:34:27,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:34:27,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:34:27,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:34:27,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:34:27,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:34:27,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:34:27,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:34:27,817 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:34:27,817 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:34:27,817 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:34:27,817 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:34:27,817 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 03:34:27,818 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 03:34:27,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-02 03:34:27,827] [main] java.version = 17.0.2 [testng] 03:34:27,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:34:27,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:27,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-02_03-34-27.log] [testng] 03:34:27,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-02 03:34:27,873] [main] testng.directory = /data [testng] [2025-03-02 03:34:27,873] [main] testng.configDirectory = /config [testng] [2025-03-02 03:34:27,881] [main] testng.multiplier = 1.0 [testng] [2025-03-02 03:34:27,882] [main] testng.in-memory = false [testng] [2025-03-02 03:34:27,882] [main] testng.allow-missing = false [testng] [2025-03-02 03:34:27,882] [main] user.language = en [testng] [2025-03-02 03:34:27,882] [main] user.country = ${user.country} [testng] [2025-03-02 03:34:27,882] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-02 03:34:28,561] [main] ---------------------------------------- [testng] [2025-03-02 03:34:28,561] [main] Total files: 18 [testng] [2025-03-02 03:34:28,561] [main] Scan time: 0.679 s (37 ms/file) [testng] [2025-03-02 03:34:28,561] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-02 03:34:34,124] [pool-1-thread-1] Initializing /data/ascb/607x.psd: [testng] 03:34:34,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:34:34,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:34,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-02_03-34-34.log] [testng] 03:34:34,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12fe6350 - End of configuration. [testng] [2025-03-02 03:34:34,393] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] 03:34:34,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:34:34,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:34,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-02_03-34-34.log] [testng] 03:34:34,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b9df8c - End of configuration. [testng] [2025-03-02 03:34:34,728] [pool-1-thread-11] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 03:34:34,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:34:34,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:34,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-02_03-34-34.log] [testng] 03:34:34,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69418fb0 - End of configuration. [testng] [2025-03-02 03:34:34,992] [pool-1-thread-10] Initializing /data/misc/venus_composite_8bit.psd: [testng] 03:34:34,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:34:34,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:34,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-02_03-34-34.log] [testng] 03:34:34,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c2cd4d - End of configuration. [testng] [2025-03-02 03:34:35,296] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 03:34:35,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:34:35,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:35,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-02_03-34-35.log] [testng] 03:34:35,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f1ef9b0 - End of configuration. [testng] [2025-03-02 03:34:35,516] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd: [testng] 03:34:35,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:34:35,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:35,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-02_03-34-35.log] [testng] 03:34:35,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb46752 - End of configuration. [testng] [2025-03-02 03:34:35,753] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 03:34:35,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:34:35,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:35,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-02_03-34-35.log] [testng] 03:34:35,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed0a8d4 - End of configuration. [testng] [2025-03-02 03:34:36,059] [pool-1-thread-6] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 03:34:36,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:34:36,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:36,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-02_03-34-36.log] [testng] 03:34:36,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73b15c26 - End of configuration. [testng] [2025-03-02 03:34:36,337] [pool-1-thread-5] Initializing /data/big-images/8kx8k.psd: [testng] 03:34:36,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:34:36,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:36,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-02_03-34-36.log] [testng] 03:34:36,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bf14b73 - End of configuration. [testng] [2025-03-02 03:34:36,573] [pool-1-thread-4] Initializing /data/ascb/423.psd: [testng] 03:34:36,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:34:36,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:36,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-02_03-34-36.log] [testng] 03:34:36,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f4606a3 - End of configuration. [testng] [2025-03-02 03:34:36,846] [pool-1-thread-3] Initializing /data/misc/glossy_orbs.psd: [testng] 03:34:36,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:34:36,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:36,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-02_03-34-36.log] [testng] 03:34:36,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ceece9 - End of configuration. [testng] [2025-03-02 03:34:37,170] [pool-1-thread-2] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 03:34:37,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:34:37,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:34:37,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-02_03-34-37.log] [testng] 03:34:37,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e2cb2a - End of configuration. [testng] [2025-03-02 03:34:41,373] [pool-1-thread-3] Initializing /data/cris/house.tif: [testng] [2025-03-02 03:34:42,306] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-02 03:34:42,877] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2025-03-02 03:34:43,109] [pool-1-thread-12] Initializing /data/misc/smilie.psd: [testng] [2025-03-02 03:34:45,727] [pool-1-thread-2] Initializing /data/simon/colour_separated_image.psd: [testng] [2025-03-02 03:34:47,255] [pool-1-thread-10] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 seconds Finished: SUCCESS